Alternatives and similar repositories for ToolDog

Users that are interested in ToolDog are comparing it to the libraries listed below

• galaxyproject / planemo
  Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…
  ☆96Updated last week
• usegalaxy-eu / ena-upload-cli
  ENA upload cli - script your Open Data upload to the European Nucleotide Archive
  ☆29Updated this week
• The-Sequence-Ontology / SO-Ontologies
  Collect of SO Ontologies
  ☆100Updated this week
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆76Updated this week
• bgruening / galaxy-rna-workbench
  Galaxy RNA workbench
  ☆40Updated 4 years ago
• usegalaxy-eu / website
  UseGalaxy.EU website (compiled version https://github.com/usegalaxy-eu/usegalaxy-eu.github.io)
  ☆21Updated this week
• ga4gh / vrs
  Extensible specification for representing and uniquely identifying biological sequence variation
  ☆90Updated 3 months ago
• SciLifeLab / Sarek
  Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
  ☆133Updated 5 years ago
• usegalaxy-eu / usegalaxy-eu-tools
  List of tools included in https://usegalaxy.eu
  ☆33Updated this week
• KHP-Informatics / ngseasy
  Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)
  ☆87Updated 8 years ago
• ga4gh / wiki
  a place for GA4GH-related wiki pages
  ☆16Updated 7 years ago
• galaxyproject / dunovo
  Reference-free duplex sequencing pipeline.
  ☆18Updated 2 years ago
• UMMS-Biocore / dolphinnext
  A graphical user interface for distributed data processing of high throughput genomics
  ☆5Updated last year
• jdidion / atropos
  An NGS read trimming tool that is specific, sensitive, and speedy. (production)
  ☆122Updated 2 months ago
• galaxyproject / galaxy-language-server
  Galaxy Language Server to help in Galaxy (https://galaxyproject.org/) tool wrappers development.
  ☆24Updated this week
• common-workflow-library / bio-cwl-tools
  CWL CommandLineTool descriptions for biology/life-sciences related applications
  ☆79Updated 3 months ago
• biowdl / tasks
  A collection of reusable WDL tasks. Category:Other
  ☆87Updated last week
• galaxyproject / iwc
  Galaxy Workflows maintained by the Intergalactic Workflow Commission
  ☆40Updated last week
• charite / jannovar
  Annotation of VCF variants with functional impact and from databases (executable+library)
  ☆59Updated this week
• ga4gh / vrs-python
  GA4GH Variation Representation Python Implementation
  ☆57Updated last week
• LANL-Bioinformatics / EDGE
  EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.
  ☆75Updated 3 weeks ago
• Illumina / interop
  C++ Library to parse Illumina InterOp files
  ☆78Updated last month
• seqeralabs / nf-tower
  Nextflow Tower system
  ☆151Updated 5 months ago
• broadinstitute / cromshell
  CLI for interacting with Cromwell servers
  ☆55Updated last year
• GenomiqueENS / dockerfiles
  ☆82Updated 3 years ago
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆80Updated last week
• BioContainers / specs
  BioContainers specifications
  ☆51Updated 2 years ago
• biocommons / uta
  Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…
  ☆66Updated 3 months ago
• clintval / sample-sheet
  Parse Illumina sample sheets with Python
  ☆50Updated last year
• ncbi / ngs
  NGS Language Bindings
  ☆119Updated last year