bigbio / qpxLinks
qpx (Quantitative Proteomics eXchange) format (aka quantms.io) a format to capture a full proteomics experiment
☆14Updated this week
Alternatives and similar repositories for qpx
Users that are interested in qpx are comparing it to the libraries listed below
Sorting:
- R package for functionally scoring phosphorylation sites☆21Updated 6 years ago
- Absolute quantification package based on quantms.io☆16Updated 2 months ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆41Updated 2 weeks ago
- DEqMS is a tool for quantitative proteomic analysis☆24Updated 7 months ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21Updated last week
- A library for QC report based on MultiQC framework☆22Updated last week
- MaxQuant with snakemake and singularity workflow for open and scalable mass spectrometry data analysis on Linux computing clusters☆27Updated 7 years ago
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆13Updated 5 months ago
- Multi-Omics Peptide Generator☆29Updated last month
- Differential Expression Analysis tool box R lang package for omics data☆46Updated 3 weeks ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 10 months ago
- R-Shiny GUI integrated with the MSstats package family☆18Updated this week
- Python package for investigating the structural context of PTMs☆28Updated 10 months ago
- Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Iso…☆64Updated this week
- MS/MS prediction for peptides☆24Updated 4 years ago
- Single cell proteomics data processing☆29Updated last month
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆23Updated 6 months ago
- Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/☆21Updated 2 years ago
- ☆36Updated 4 months ago
- A Python interface to proteomics data repositories☆36Updated 5 months ago
- Repository for the Broad Institute Proteogenomic Data Analysis Center (PGDAC) established by the NIH Clinical Proteomics Tumor Analysis C…☆37Updated 3 weeks ago
- Python client for PRIDE Archive Rest API.☆26Updated last month
- ☆66Updated last year
- Integration ribosome profiling - mass spectrometry☆15Updated last month
- ☆18Updated this week
- A label free quantification tool.☆18Updated 5 months ago
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆20Updated 10 months ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago
- ☆23Updated 2 weeks ago