Alternatives and similar repositories for dso

Users that are interested in dso are comparing it to the libraries listed below

• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆62Updated last month
• pachterlab / seqspec
  machine-readable file format for genomic library sequence and structure
  ☆120Updated this week
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆42Updated 2 weeks ago
• nf-core / rnasplice
  rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
  ☆54Updated 3 weeks ago
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆39Updated 2 weeks ago
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆29Updated last week
• ygidtu / trackplot
  trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…
  ☆91Updated last month
• ArcInstitute / xsra
  An efficient CLI to extract sequences from the SRA
  ☆105Updated this week
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆75Updated this week
• bentsherman / nf-boost
  Experimental features for Nextflow
  ☆43Updated 3 months ago
• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆60Updated 3 weeks ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆36Updated last month
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆62Updated last month
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆80Updated 4 months ago
• LHentges / LanceOtron
  ☆29Updated 10 months ago
• seqeralabs / wave-showcase
  Examples showing how to configure Nextflow to run with Wave containers provisioning service
  ☆21Updated 7 months ago
• nf-core / airrflow
  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
  ☆64Updated 2 weeks ago
• mlbendall / telescope
  Quantification of transposable element expression using RNA-seq
  ☆71Updated last year
• refgenie / refgenie
  Reference genome resource manager
  ☆76Updated last year
• mrvollger / SmkTemplate
  A template repository for snakemake workflows.
  ☆38Updated 7 months ago
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated last month
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆57Updated 5 months ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆51Updated 6 months ago
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆46Updated 2 years ago
• derijkp / scywalker
  A program for the analysis of single cell nanopore long read data
  ☆19Updated last week
• harbourlab / SparK
  Publication quality NGS track plotting
  ☆113Updated 3 years ago
• dozmorovlab / excluderanges
  Genomic coordinates of problematic genomic regions as GRanges
  ☆40Updated 6 months ago
• nf-core / circdna
  Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…
  ☆31Updated 3 weeks ago
• sbooeshaghi / single-cell-vocabulary
  ☆26Updated last year
• nunofonseca / fastq_utils
  Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
  ☆35Updated last week