Alternatives and similar repositories for DCAlign:

Users that are interested in DCAlign are comparing it to the libraries listed below

• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆12Updated last month
• KULL-Centre / _2022_functional-sites-cagiada
  ☆22Updated last year
• issararab / EPSAPG
  EPSAPG: An Extensive Protein Sequence Alignment Profiles Generator Pipeline Combining MMseqs2 and PSI-BLAST
  ☆11Updated 10 months ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆37Updated 7 months ago
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆23Updated last year
• JudeWells / chainsaw
  ☆31Updated 4 months ago
• UCLOrengoGroup / cath-alphaflow
  ☆17Updated 2 months ago
• clairemcwhite / vcmsa
  ☆29Updated last year
• nmatzke / 3diphy
  Maximum likelihood structural phylogenetics by including Foldseek 3Di characters. Supporting Information for Puente-Lelievre et al. 2023n…
  ☆18Updated 7 months ago
• idptools / sparrow
  Next generation sequence parameter library for proteins
  ☆26Updated 3 weeks ago
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆21Updated last year
• kWeissenow / MutAmore
  Rendering protein mutation movies from predicted 3D structures
  ☆20Updated last year
• steineggerlab / afdb-clusters-analysis
  Scripts to generate and analyze afdb clusters
  ☆11Updated last year
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆34Updated 2 years ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆27Updated last year
• andyposbe / ColabFold-Pipeline-Toolkit
  The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.
  ☆16Updated last year
• ShintaroMinami / mican
  Non-sequential structural alignment program for protein structure
  ☆18Updated 3 months ago
• PombertLab / 3DFI
  The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
  ☆19Updated 11 months ago
• cbcrg / msa-af2-nf
  Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models
  ☆12Updated 2 years ago
• maovshao / PLMAlign
  PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity
  ☆21Updated last month
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆17Updated 5 years ago
• kiharalab / GO2Sum
  GO2Sum is a deep learning based summarizer that generates human-readable summaries for GO term annotations made by protein function predi…
  ☆13Updated 10 months ago
• BernhoferM / TMbed
  Transmembrane proteins predicted through Language Model embeddings
  ☆33Updated 3 weeks ago
• althonos / mini3di
  A NumPy port of the foldseek code for encoding protein structures to 3di.
  ☆38Updated 4 months ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆34Updated last year
• refresh-bio / protestar
  Protein Structure Archiver
  ☆12Updated 8 months ago
• konstin / knn-for-homology
  Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"
  ☆11Updated last year
• bioinf-mcb / Metagenomic-DeepFRI
  Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
  ☆36Updated 2 months ago
• sokrypton / seqsal
  ☆11Updated 3 years ago
• SNU-CSSB / RF2-Lite
  ☆25Updated 8 months ago