waldronlab / MicrobiomeWorkshop
A workshop on microbiome analysis using Bioconductor
☆15Updated 5 years ago
Alternatives and similar repositories for MicrobiomeWorkshop:
Users that are interested in MicrobiomeWorkshop are comparing it to the libraries listed below
- This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://gr…☆17Updated last year
- Talk to the NCBI EUtils☆21Updated 4 years ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Updated 9 months ago
- Handy tools for Microbiome analysis in R☆18Updated 5 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆30Updated last year
- Perform microbiome-wide association studies with a variety of models☆16Updated 7 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- ☆19Updated last year
- Bioconductor package that makes BIG data pint-sized.☆20Updated 11 months ago
- A comprehensive and customizable R package for microbiome analysis.☆21Updated 2 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 7 years ago
- tidyMicro GitHup Repository☆18Updated 3 years ago
- Intro to R and RStudio for Genomics☆28Updated this week
- ☆12Updated 7 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.☆14Updated 11 years ago
- ☆13Updated last year
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 5 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated last month
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 5 years ago
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆20Updated 2 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated 8 months ago
- SHAMAN is a SHiny application for Metagenomic ANalysis including a bioinformatic workflow, the statistical analysis and multiple visualiz…☆13Updated 11 months ago
- Template for building a bioconductor workshop package using github actions☆19Updated 6 months ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Microbiome analysis☆52Updated this week
- Project Organization and Management for Genomics☆24Updated this week
- Seamless navigation through combined results of set-based and network-based enrichment analysis☆20Updated 8 months ago
- SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package☆17Updated 4 years ago
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated last month