A workshop on microbiome analysis using Bioconductor
☆16Jun 20, 2019Updated 7 years ago
Alternatives and similar repositories for MicrobiomeWorkshop
Users that are interested in MicrobiomeWorkshop are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ying's tools for analysis, with particular focus on microbiome data☆40May 20, 2026Updated last month
- Data, scripts, and outputs for the npj Biofilms and Microbiomes paper "Analysis of microbial compositions: A review of normalization and …☆11Aug 23, 2020Updated 5 years ago
- This python package is for transitioning bioconductor from SVN to git☆14Mar 15, 2023Updated 3 years ago
- 16S rRNA Sequencing Data from the Human Microbiome Project☆10May 14, 2026Updated last month
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆11Mar 10, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Independent Hypothesis Weighting☆17Sep 25, 2023Updated 2 years ago
- Manage Files Across Sessions☆14Apr 29, 2026Updated 2 months ago
- Provides classes for working with sets☆11Dec 19, 2025Updated 6 months ago
- Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination☆15Jun 17, 2026Updated 2 weeks ago
- Read and Write RDS files, in Python☆28Updated this week
- A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package☆15May 8, 2026Updated last month
- This repository contains a QSAR model that predicts the ability of a chemical compound to inhibit the gene associated with Alzheimer's, B…☆11Oct 1, 2021Updated 4 years ago
- R/Shiny application for viewing microbial community data☆19Dec 17, 2020Updated 5 years ago
- Package to standardize country names and set Correlate of War IDs☆12Jun 10, 2026Updated 3 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆14Feb 17, 2022Updated 4 years ago
- Curated Metagenomic Data of the Human Microbiome☆156Jun 19, 2026Updated 2 weeks ago
- integrative pathway analysis with modern PCA methodology and gene selection☆11Jun 29, 2023Updated 3 years ago
- Develop and host GitHub actions for Bioconductor☆11Apr 22, 2021Updated 5 years ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆14Jul 22, 2025Updated 11 months ago
- 🦠 A tool for identifying and analyzing functions in microbial genomes.☆16Sep 25, 2024Updated last year
- Interface to 10x Genomics' 1.3 m single cell data set☆19Aug 2, 2018Updated 7 years ago
- A comprehensive and customizable R package for microbiome analysis.☆24Jun 12, 2026Updated 3 weeks ago
- The code and distributable for designing minimal microbial communities with specified metabolic functions.☆11Aug 9, 2017Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆16Nov 19, 2025Updated 7 months ago
- ☆14Mar 18, 2022Updated 4 years ago
- ☆15Aug 6, 2020Updated 5 years ago
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆92Aug 22, 2025Updated 10 months ago
- Helper script for bioconductor/bioconductor_docker☆13May 19, 2026Updated last month
- Sample Metadata Curation for curatedMetagenomicData☆32Updated this week
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago
- Data-driven chemical-induced toxicity prediction by machine learning using chemical and bioactivity data☆10Feb 7, 2017Updated 9 years ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆28Aug 24, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Modeling Spatio-temporal Dynamics of Chromatin Marks☆12Aug 2, 2021Updated 4 years ago
- ☆34Sep 5, 2024Updated last year
- ☆27Jan 29, 2026Updated 5 months ago
- Data Mining Historical Newspaper Metadata (METS/ALTO formats)☆25Feb 6, 2026Updated 4 months ago
- Course material for OPEN & REPRODUCIBLE MICROBIOME DATA ANALYSIS SPRING SCHOOL☆29May 1, 2020Updated 6 years ago
- R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)☆25Dec 15, 2020Updated 5 years ago
- Microbiome Analysis Plotting and Visualization☆12Jun 15, 2026Updated 2 weeks ago