A workshop on microbiome analysis using Bioconductor
☆15Jun 20, 2019Updated 6 years ago
Alternatives and similar repositories for MicrobiomeWorkshop
Users that are interested in MicrobiomeWorkshop are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated this week
- Data, scripts, and outputs for the npj Biofilms and Microbiomes paper "Analysis of microbial compositions: A review of normalization and …☆11Aug 23, 2020Updated 5 years ago
- 16S rRNA Sequencing Data from the Human Microbiome Project☆10Mar 26, 2026Updated 2 weeks ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆11Mar 10, 2022Updated 4 years ago
- Manage Files Across Sessions☆13Oct 30, 2025Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Independent Hypothesis Weighting☆16Sep 25, 2023Updated 2 years ago
- Provides classes for working with sets☆11Dec 19, 2025Updated 3 months ago
- Read RDS files, in Python☆27Apr 6, 2026Updated last week
- A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package☆15Apr 16, 2025Updated 11 months ago
- This repository contains a QSAR model that predicts the ability of a chemical compound to inhibit the gene associated with Alzheimer's, B…☆11Oct 1, 2021Updated 4 years ago
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 6 years ago
- R/Shiny application for viewing microbial community data☆19Dec 17, 2020Updated 5 years ago
- Package to standardize country names and set Correlate of War IDs☆12Mar 7, 2023Updated 3 years ago
- ☆13Feb 17, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Finnish Meteorological Institute open data API R client☆10Sep 9, 2019Updated 6 years ago
- Curated Metagenomic Data of the Human Microbiome☆151Updated this week
- integrative pathway analysis with modern PCA methodology and gene selection☆11Jun 29, 2023Updated 2 years ago
- Develop and host GitHub actions for Bioconductor☆11Apr 22, 2021Updated 4 years ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆14Jul 22, 2025Updated 8 months ago
- 🦠 A tool for identifying and analyzing functions in microbial genomes.☆16Sep 25, 2024Updated last year
- Interface to 10x Genomics' 1.3 m single cell data set☆18Aug 2, 2018Updated 7 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Aug 10, 2025Updated 8 months ago
- The code and distributable for designing minimal microbial communities with specified metabolic functions.☆11Aug 9, 2017Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Microbiota Analysis in R Easily☆12Jul 14, 2022Updated 3 years ago
- microbiome data simulation package☆22Oct 2, 2025Updated 6 months ago
- mSWEEP High-resolution sweep metagenomics using fast probabilistic inference☆15Nov 19, 2025Updated 4 months ago
- ☆15Aug 6, 2020Updated 5 years ago
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆92Aug 22, 2025Updated 7 months ago
- Helper script for bioconductor/bioconductor_docker☆13Mar 13, 2026Updated last month
- Sample Metadata Curation for curatedMetagenomicData☆30Mar 26, 2026Updated 2 weeks ago
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago
- Data-driven chemical-induced toxicity prediction by machine learning using chemical and bioactivity data☆10Feb 7, 2017Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Aug 24, 2022Updated 3 years ago
- Modeling Spatio-temporal Dynamics of Chromatin Marks☆12Aug 2, 2021Updated 4 years ago
- ☆34Sep 5, 2024Updated last year
- ☆26Jan 29, 2026Updated 2 months ago
- Digenome-toolkit ver2.☆16Nov 1, 2021Updated 4 years ago
- Course material for OPEN & REPRODUCIBLE MICROBIOME DATA ANALYSIS SPRING SCHOOL☆29May 1, 2020Updated 5 years ago
- Microbiome Analysis Plotting and Visualization☆12Mar 23, 2026Updated 3 weeks ago