Making whole bacterial genome sequencing data analysis easy
☆116Apr 22, 2025Updated last year
Alternatives and similar repositories for tormes
Users that are interested in tormes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A scalable bacterial genome assembly, annotation and analysis pipeline☆80Dec 5, 2023Updated 2 years ago
- "Reads to report" for public health and clinical microbiology☆145Dec 9, 2025Updated 10 months ago
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆66Oct 26, 2026Updated last week
- A toolbox for pangenome analysis and threshold evaluation.☆103Jul 8, 2022Updated 4 years ago
- A flexible pipeline for complete analysis of bacterial genomes☆525Aug 5, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Pan-genome wide association studies☆228May 29, 2024Updated 2 years ago
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 7 years ago
- Antimicrobial Resistance Identification By Assembly☆187Oct 12, 2023Updated 3 years ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆159Sep 2, 2026Updated 2 months ago
- Plasmid and antimicrobial resistance pipeline☆16Sep 28, 2026Updated last month
- An updated pipeline for pangenome investigation☆379Oct 26, 2026Updated last week
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆129Oct 22, 2026Updated last week
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆209Jun 10, 2026Updated 4 months ago
- Rapid determination of appropriate reference genomes.☆103Jan 22, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆271Jun 11, 2026Updated 4 months ago
- Intra-species bacterial contamination detection☆26Jul 10, 2026Updated 3 months ago
- DDBJ Fast Annotation and Submission Tool☆86Oct 23, 2026Updated last week
- Download assembly files from NCBI☆12May 9, 2023Updated 3 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆25Apr 24, 2018Updated 8 years ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆157Dec 31, 2025Updated 10 months ago
- Pipeline for metabolic annotation of microbial genomes☆154Mar 20, 2025Updated last year
- Gene Absence Presence Identification tool.☆27Mar 28, 2025Updated last year
- A complete pipeline for metagenomic analysis☆456Aug 28, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- whole genome MLST analysis☆57Jun 17, 2026Updated 4 months ago
- Scan contig files against PubMLST typing schemes☆307Jun 17, 2026Updated 4 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆692Oct 11, 2026Updated 3 weeks ago
- Short Read Sequence Typing for Bacterial Pathogens☆153Jun 20, 2021Updated 5 years ago
- ☆20Dec 7, 2020Updated 5 years ago
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins☆226Oct 7, 2026Updated 3 weeks ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆158Jul 24, 2026Updated 3 months ago
- Assembly based core genome SNP alignments for bacteria☆25Oct 23, 2019Updated 7 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆31Jul 18, 2025Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- In silico serotype prediction for Listeria monocytogenes☆11Feb 23, 2026Updated 8 months ago
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆36Oct 6, 2026Updated 3 weeks ago
- Mass screening of contigs for antimicrobial and virulence genes☆516Jul 17, 2026Updated 3 months ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆40Sep 22, 2022Updated 4 years ago
- BSR-Based Allele Calling Algorithm☆153Oct 8, 2026Updated 3 weeks ago
- Identify phage regions in bacterial genomes for masking purposes☆33Sep 5, 2019Updated 7 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆343Updated this week