Making whole bacterial genome sequencing data analysis easy
☆113Apr 22, 2025Updated last year
Alternatives and similar repositories for tormes
Users that are interested in tormes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A scalable bacterial genome assembly, annotation and analysis pipeline☆77Dec 5, 2023Updated 2 years ago
- A flexible pipeline for complete analysis of bacterial genomes☆504Updated this week
- "Reads to report" for public health and clinical microbiology☆142Dec 9, 2025Updated 4 months ago
- A toolbox for pangenome analysis and threshold evaluation.☆100Jul 8, 2022Updated 3 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆25Apr 24, 2018Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Pan-genome wide association studies☆215May 29, 2024Updated last year
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆259Dec 13, 2025Updated 4 months ago
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆63Mar 3, 2026Updated last month
- Antimicrobial Resistance Identification By Assembly☆187Oct 12, 2023Updated 2 years ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆154Oct 2, 2025Updated 6 months ago
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 6 years ago
- A complete pipeline for metagenomic analysis☆441Apr 22, 2026Updated last week
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆121Jan 22, 2025Updated last year
- An updated pipeline for pangenome investigation☆356Apr 22, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Mar 8, 2024Updated 2 years ago
- IS mapping software☆58Dec 3, 2021Updated 4 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Dec 3, 2024Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Oct 23, 2019Updated 6 years ago
- ☆19Dec 7, 2020Updated 5 years ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆412Mar 26, 2026Updated last month
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Aug 5, 2022Updated 3 years ago
- ☆10May 14, 2025Updated 11 months ago
- Whole genome core alignments from multiple draft genomes☆13Sep 14, 2016Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Fast alignment-free pangenome creation and exploration☆28Apr 16, 2020Updated 6 years ago
- Mass screening of contigs for antimicrobial and virulence genes☆491Apr 3, 2026Updated 3 weeks ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆174Apr 16, 2025Updated last year
- Pairwise SNP distance matrix from a FASTA sequence alignment☆154Dec 31, 2025Updated 4 months ago
- Intra-species bacterial contamination detection☆25Apr 13, 2026Updated 2 weeks ago
- Plasmid and antimicrobial resistance pipeline☆16Dec 30, 2024Updated last year
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆332Apr 20, 2026Updated last week
- Download assembly files from NCBI☆13May 9, 2023Updated 2 years ago
- Scan contig files against PubMLST typing schemes☆278Mar 26, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Dec 2, 2024Updated last year
- Pipeline for metabolic annotation of microbial genomes☆150Mar 20, 2025Updated last year
- whole genome MLST analysis☆51Mar 27, 2026Updated last month
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆27Sep 7, 2019Updated 6 years ago
- Identify phage regions in bacterial genomes for masking purposes☆33Sep 5, 2019Updated 6 years ago
- Reorients assembled microbial sequences☆137Aug 21, 2025Updated 8 months ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆81Sep 20, 2023Updated 2 years ago