nmquijada / tormesLinks
Making whole bacterial genome sequencing data analysis easy
☆109Updated 3 months ago
Alternatives and similar repositories for tormes
Users that are interested in tormes are comparing it to the libraries listed below
Sorting:
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated last year
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆87Updated last year
- A toolbox for pangenome analysis and threshold evaluation.☆100Updated 3 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆77Updated 2 years ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆115Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 4 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆55Updated last year
- Pairwise SNP distance matrix from a FASTA sequence alignment☆137Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆74Updated last year
- Bioinformatics Tools☆89Updated this week
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆117Updated last month
- IS mapping software☆56Updated 3 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆56Updated 3 years ago
- DDBJ Fast Annotation and Submission Tool☆81Updated 3 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆96Updated 4 months ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆138Updated last week
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆47Updated 4 months ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆30Updated 5 years ago
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆102Updated last year
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆103Updated 6 months ago
- Bioinformatics program inStrain☆174Updated 3 months ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated 11 months ago
- A toolbox for comparative genomics.☆104Updated 4 years ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆145Updated 3 months ago
- Metatranscriptomics Tutorial☆63Updated 2 years ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆158Updated last week
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆81Updated last month
- ☆57Updated 2 weeks ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆90Updated last year