nmquijada / tormesLinks
Making whole bacterial genome sequencing data analysis easy
☆108Updated 2 months ago
Alternatives and similar repositories for tormes
Users that are interested in tormes are comparing it to the libraries listed below
Sorting:
- A toolbox for pangenome analysis and threshold evaluation.☆98Updated 3 years ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆116Updated 3 weeks ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆115Updated last year
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆86Updated last year
- A scalable bacterial genome assembly, annotation and analysis pipeline☆74Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆122Updated last year
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆75Updated 2 years ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆137Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆131Updated 2 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆103Updated 5 months ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆144Updated last week
- Best-fit model selection☆81Updated last year
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆136Updated last year
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆101Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- A toolbox for comparative genomics.☆104Updated 4 years ago
- Bioinformatics Tools☆87Updated 2 weeks ago
- DAS Tool☆153Updated last year
- "Reads to report" for public health and clinical microbiology☆141Updated last year
- ☆137Updated last year
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆81Updated last month
- DDBJ Fast Annotation and Submission Tool☆79Updated 2 months ago
- Using ggtree to build phylogenetic trees☆47Updated 8 months ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆145Updated 2 months ago
- ☆127Updated 2 weeks ago
- Massively parallel phylogenetic placement of genetic sequences☆84Updated 2 years ago
- SKESA assembler☆120Updated 9 months ago
- Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.☆117Updated 5 months ago