willsheffler / rifLinks
Rotamer Interaction Field Python Libraries for Computational Protein Design
☆11Updated 7 years ago
Alternatives and similar repositories for rif
Users that are interested in rif are comparing it to the libraries listed below
Sorting:
- Tutorial files☆11Updated 10 months ago
- Rosetta FunFolDes – a general framework for the computational design of functional proteins.☆19Updated 6 years ago
- Scripts and data deposition for de novo heterodimers manuscript☆11Updated 6 years ago
- Some scripts that I keep using over and over.☆18Updated 5 months ago
- ☆19Updated 2 years ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 3 years ago
- ☆26Updated last month
- Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.☆11Updated 4 years ago
- De novo design of small molecule binding sites into proteins☆12Updated 4 years ago
- Making Protein folding accessible to all!☆22Updated last year
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆23Updated last year
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆14Updated 3 months ago
- A Motif Hash Based Method for Matching Crosslinkers into Peptides and Proteins☆18Updated last year
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆16Updated 4 years ago
- Physical energy function for protein sequence design☆30Updated 2 years ago
- DiffDock implementation that adds support for HPC execution using Slurm and Singularity☆25Updated 2 weeks ago
- This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua☆27Updated 4 months ago
- FASTDock: A Pipeline for Allosteric Drug Discovery - example scripts and jupyter notebook☆18Updated last year
- The official repository for TherML - a machine learning approach to predict scFv and antibody thermostability☆7Updated last year
- What exactly are the non-canonical amino acids in the Rosetta database folder?☆11Updated 5 years ago
- A collection of tools that generate and analyse side-chain rotamer libraries☆10Updated 2 weeks ago
- ☆15Updated last year
- EViS: an Enhanced Virtual Screening Approach based on Pocket Ligand Similarity☆14Updated 3 years ago
- scripts to find PBD structures for cancer driver proteins☆31Updated 3 months ago
- Repo contains source code of the SurfaceID paper☆23Updated last year
- ☆32Updated last year
- Building more accurate protein structures from backbone torsion angles☆14Updated 2 months ago
- Scores for Hydrophobicity and Charges based on SASAs☆31Updated 2 months ago
- ☆17Updated last year
- Fast, accurate, and deterministic protein side-chain packing☆31Updated 3 months ago