Alternatives and similar repositories for rif:

Users that are interested in rif are comparing it to the libraries listed below

• LPDI-EPFL / FunFolDesData
  Rosetta FunFolDes – a general framework for the computational design of functional proteins.
  ☆18Updated 5 years ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆18Updated 3 weeks ago
• Kortemme-Lab / match_ligand_binding_sites
  Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.
  ☆11Updated 4 years ago
• uagaug / DeNovoHeterodimers
  Scripts and data deposition for de novo heterodimers manuscript
  ☆11Updated 6 years ago
• psalveso / pyRIF
  Using Rotamer Interaction Fields from RIFGen/Dock in python
  ☆16Updated 3 years ago
• strauchlab / iNNterfaceDesign
  ☆19Updated 2 years ago
• jaaamessszzz / BindingSitesFromFragments
  De novo design of small molecule binding sites into proteins
  ☆13Updated 3 years ago
• LongxingCao / pymol_scripts
  bakerlab pymol scripts
  ☆9Updated 4 years ago
• matteoferla / rdkit_to_params
  Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file
  ☆27Updated 9 months ago
• sokrypton / roscon2024
  Tutorial files
  ☆11Updated 5 months ago
• Furman-Lab / PatchMAN
  ☆24Updated 5 months ago
• tommyhuangthu / EvoEF2
  a fast and accurate physical energy function extended from EvoEF for protein sequence design
  ☆25Updated last year
• Hoecker-Lab / protlego
  Automated construction of protein chimeras and their analysis.
  ☆14Updated last year
• ohuelab / ColabDesign-cyclic-binder
  ☆29Updated last year
• nekitmm / DLPacker
  DLPacker
  ☆28Updated 4 months ago
• atommoyer / stapler
  A Motif Hash Based Method for Matching Crosslinkers into Peptides and Proteins
  ☆17Updated 11 months ago
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆19Updated last year
• dtischer / trdesign-motif
  Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…
  ☆16Updated 3 years ago
• agrybauskas / rotag
  A collection of tools that generate and analyse side-chain rotamer libraries
  ☆10Updated this week
• CSB-KaracaLab / prot-on
  This repo contains the collection of codes to find designer interfacial mutations
  ☆16Updated last year
• ikalvet / heme_binder_design
  ☆8Updated last year
• swanss / peptide_design
  This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"
  ☆15Updated last year
• JingHuangLab / EViS
  EViS: an Enhanced Virtual Screening Approach based on Pocket Ligand Similarity
  ☆13Updated 3 years ago
• tommyhuangthu / FASPR
  an ultra-fast and accurate program for deterministic protein sidechain packing
  ☆28Updated last month
• JoaoRodrigues / interfacea
  An open-source library for the analysis of protein interactions.
  ☆29Updated 3 years ago
• THGLab / int2cart
  Building more accurate protein structures from backbone torsion angles
  ☆14Updated last year
• maltesie / bridge2
  GUI for interactive graph-based analyses of hydrogen bond networks in crystal structures and MD trajectories.
  ☆9Updated last year
• JoaoRodrigues / openmm_scripts
  Collection of Python scripts to setup and run simulations with OpenMM
  ☆15Updated 4 years ago
• brianjimenez / pydock_tutorial
  PyDock Tutorial
  ☆30Updated 6 years ago