matsengrp / olmstedLinks
B-cell repertoire and clonal family tree explorer
☆16Updated this week
Alternatives and similar repositories for olmsted
Users that are interested in olmsted are comparing it to the libraries listed below
Sorting:
- WDL plugin for pytest☆48Updated 2 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Updated 7 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 6 years ago
- Easily run WDL workflows on GCP☆14Updated 4 years ago
- NExt generation Analysis Toolbox☆14Updated 9 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 7 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year
- Integrative visualization of multiple omic datasets onto KEGG pathways.☆11Updated 3 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated 2 years ago
- Best practices for readable, sharable, and verifiable R code☆18Updated 6 years ago
- Exploration, clustering, visualization and classification of DNA damage patterns☆19Updated 4 years ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- A tool for running bioinformatics workflows locally or in the cloud.☆30Updated 5 years ago
- Genomic Visualization Catalog☆13Updated 2 years ago
- Library for indexing VCF files for random access searches by rsID☆17Updated 2 months ago
- ☆22Updated last year
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- Anno is a variant annotation tool☆24Updated 9 years ago
- Butler is a framework for running scientific workflows on public and academic clouds.☆69Updated 5 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 6 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis☆23Updated 2 weeks ago
- Docker image of JBrowse Genome Browser☆15Updated 4 years ago
- Docker images of bioinformatics software☆21Updated 8 years ago
- A fast, easy way to present complex bioinformatics pipelines to biologists☆11Updated 7 years ago
- ☆11Updated 2 years ago
- variant discovery and annotation using GATK and Ensembl☆17Updated 12 years ago
- Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R☆36Updated 3 years ago