Alternatives and similar repositories for olmsted

Users that are interested in olmsted are comparing it to the libraries listed below

• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆48Updated 2 years ago
• brinkmanlab / GenomeD3Plot
  SVG based genome viewer written in javascript using D3
  ☆67Updated 7 years ago
• Rothamsted / knetminer
  KnetMiner - webapp to search and visualize genome-scale knowledge graphs
  ☆29Updated last month
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago
• bcbio / bcbio.variation.recall
  Parallel merging, squaring off and ensemble calling for genomic variants
  ☆20Updated 5 years ago
• DugongBioinformatics / Dugong
  Dugong - Scientific Linux Container
  ☆18Updated 7 years ago
• epiviz / epiviz
  EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding o…
  ☆71Updated 2 years ago
• broadinstitute / wdl-runner
  Easily run WDL workflows on GCP
  ☆14Updated 3 years ago
• dnanexus-archive / dx-cwl
  Import and run CWL workflows on DNAnexus (alpha)
  ☆13Updated 6 years ago
• MonashBioinformaticsPlatform / RNAsik-pipe
  RNAsik - more than just a pipeline
  ☆13Updated last year
• marcos-diazg / musica
  MuSiCa - Mutational Signatures in Cancer
  ☆23Updated last year
• hammerlab / cohorts
  Utilities for analyzing mutations and neoepitopes in patient cohorts
  ☆20Updated 7 years ago
• aCLImatise / CliHelpParser
  Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)
  ☆15Updated 4 years ago
• jlanga / smsk
  Snakemake skeleton - Build workflows with Snakemake
  ☆19Updated last year
• michaelbarton / bioinformatics-career-survey
  Survey of bioinformatics field
  ☆26Updated 13 years ago
• bgruening / coding_for_big_data
  X things you should take into consideration if you code for big data analysis
  ☆23Updated 7 years ago
• jrderuiter / geneviz
  Library for visualising genomic features in Python.
  ☆15Updated 8 years ago
• fikipollo / paintomics3
  Integrative visualization of multiple omic datasets onto KEGG pathways.
  ☆11Updated 3 years ago
• ncbi / JUDI
  This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many p…
  ☆34Updated 3 years ago
• stjude / proteinpaint
  Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.
  ☆33Updated this week
• FRED-2 / Fred2
  Python-based framework for computational immunomics
  ☆40Updated 4 years ago
• openvax / varlens
  commandline manipulation of genomic variants and NGS reads
  ☆19Updated 11 months ago
• quelopes / GeNNet
  Integrated platform for unifying scientific workflow management and graph databases for transcriptome data analysis.
  ☆10Updated 6 years ago
• kkdey / aRchaic
  Exploration, clustering, visualization and classification of DNA damage patterns
  ☆19Updated 4 years ago
• quinlan-lab / ccr
  Building the constrained coding regions (CCR) model
  ☆16Updated 6 years ago
• yakneens / butler
  Butler is a framework for running scientific workflows on public and academic clouds.
  ☆69Updated 5 years ago
• tiagoantao / pygenomics
  A library for next generation genomics in Python 3
  ☆18Updated 7 years ago
• nextflow-io / nf-hack18
  Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/
  ☆18Updated 6 years ago
• roryk / bcbio.rnaseq
  Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …
  ☆24Updated 7 years ago
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆44Updated last year