Generate and process BAM files from Illumina sequencing instrument files
☆23Feb 25, 2016Updated 10 years ago
Alternatives and similar repositories for illumina2bam
Users that are interested in illumina2bam are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 6 months ago
- libmaus☆12Apr 16, 2015Updated 11 years ago
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 7 years ago
- [DEPRECATED] MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆22Aug 13, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Aligner for sequencing data☆21Apr 20, 2026Updated 6 months ago
- A utility for merging and genotyping Illumina-style GVCFs.☆34Feb 26, 2019Updated 7 years ago
- An accurate base caller for Illumina non-patterned sequencing platforms☆13Mar 10, 2019Updated 7 years ago
- collection of data structures and algorithms☆19Mar 19, 2019Updated 7 years ago
- Process Illumina instrument data into SAM/BAM/CRAM files.☆10Jul 6, 2026Updated 4 months ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆29Mar 9, 2023Updated 3 years ago
- Creates a rarefaction curve to measure complexity in RNA Seq data using start position☆13Apr 2, 2017Updated 9 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 10 years ago
- Processing and analysis of data coming from Illumina sequencing machines☆11Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Parses and Plots Illumina SAV files☆13Jan 30, 2019Updated 7 years ago
- Variant Caller Analysis Dashboard and Data Management System☆36Feb 8, 2016Updated 10 years ago
- generating workflows with XML and XSLT☆11Mar 15, 2015Updated 11 years ago
- Probabilistic HLA typing☆35Aug 31, 2019Updated 7 years ago
- VIPER (Variant InsPector and Expert Rating tool) can be utilised to view variant calls and decide whether or not those are true or false …☆16Jan 17, 2022Updated 4 years ago
- A Better Sequencing Simulator for Metagenomics☆21May 8, 2020Updated 6 years ago
- ☆15Aug 22, 2023Updated 3 years ago
- Code for my Summer of Code Project, "loci-NGS", which is a program for manipulating, storing and outputting large multi-locus datasets.☆10Jul 16, 2012Updated 14 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Apr 8, 2016Updated 10 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Utility programs to trim or sort Illumina reads with adapter sequences☆15Jul 23, 2013Updated 13 years ago
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Nov 19, 2019Updated 6 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆19Mar 5, 2019Updated 7 years ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Mar 30, 2021Updated 5 years ago
- EXPERIMENTAL implementation of side graph☆10Apr 16, 2015Updated 11 years ago
- The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data☆32Feb 20, 2018Updated 8 years ago
- A small program that glues together other programs allowing a user to input a codon alignment in FASTA format and produce an annotated ph…☆19Jan 14, 2015Updated 11 years ago
- Scripts to visualize the thumbnail images from illumina sequencing machines☆14Mar 16, 2016Updated 10 years ago
- The Exome Coverage and Identification Report displays the coverage of every target region in your capture design. It also displays regio…☆14Apr 22, 2015Updated 11 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- BioDSL (pronounced Biodiesel) is a Domain Specific Language for creating bioinformatic analysis workflows.☆16Jul 30, 2018Updated 8 years ago
- eXtasy: Variant Prioritization by Genomic Data Fusion☆13Feb 19, 2014Updated 12 years ago
- Ruby UCSC API: An API for the UCSC Genome Database☆19Jul 21, 2022Updated 4 years ago
- ☆24Jan 25, 2024Updated 2 years ago
- Deduplication for cfDNA sequencing data☆11Jul 5, 2017Updated 9 years ago
- A tool for visualisation of gene set over-representation analysis (GSOA).☆10Jun 27, 2019Updated 7 years ago