wtsi-npg / illumina2bamLinks
Generate and process BAM files from Illumina sequencing instrument files
☆23Updated 9 years ago
Alternatives and similar repositories for illumina2bam
Users that are interested in illumina2bam are comparing it to the libraries listed below
Sorting:
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 months ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 8 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 8 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 6 years ago
- create a gemini-compatible database from a VCF☆55Updated 5 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- extract SV signal from a BAM☆11Updated 7 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 7 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 3 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- ☆29Updated 4 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 6 years ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.☆11Updated 5 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- Haplotype-based somatic genome simulator☆10Updated 8 years ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Updated 5 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 5 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 5 years ago