wtsi-npg / illumina2bamLinks
Generate and process BAM files from Illumina sequencing instrument files
☆23Updated 9 years ago
Alternatives and similar repositories for illumina2bam
Users that are interested in illumina2bam are comparing it to the libraries listed below
Sorting:
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 11 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 8 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- method to estimate PCR duplication rate from high-throughput sequencing data☆15Updated 7 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data☆30Updated 7 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- An awk-like VCF parser☆56Updated last year
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- ☆22Updated 2 weeks ago
- An approximate sequence pattern matcher for FASTQ/FASTA files.☆30Updated 9 years ago
- Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.☆24Updated 10 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago