wtsi-npg / illumina2bamLinks
Generate and process BAM files from Illumina sequencing instrument files
☆23Updated 9 years ago
Alternatives and similar repositories for illumina2bam
Users that are interested in illumina2bam are comparing it to the libraries listed below
Sorting:
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline☆33Updated 7 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated last year
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- LoFreq Version 3☆27Updated 4 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Updated 5 years ago
- Tools for bam file processing☆55Updated 10 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated last month
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Updated 5 years ago
- Variant caller GUI + genetic disease analysis☆22Updated 5 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 9 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- sort genomic data☆36Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated this week