crowelab / PyIR

Related projects: ⓘ

• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆32Updated this week
• brineylab / grp-paper
  Code and data used in The Great Repertoire Project
  ☆29Updated 3 years ago
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆32Updated 2 years ago
• GreiffLab / immuneSIM
  ☆38Updated 9 months ago
• alchemab / bcr-repertoire-papers
  Collection of papers related to BCR repertoire analyses
  ☆17Updated 2 years ago
• xinyu-dev / igblast
  Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python
  ☆27Updated 2 years ago
• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆40Updated last week
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆48Updated last month
• ctokheim / deepDegron
  Deep learning model to predict degron sequences
  ☆18Updated last year
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆60Updated this week
• psathyrella / partis
  B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
  ☆55Updated 3 weeks ago
• moss-lab / ScanFold
  ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…
  ☆15Updated last year
• Genentech / Absolve
  Absolve antibody variable domain sequence analysis
  ☆16Updated 6 years ago
• svalkiers / clusTCR
  CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…
  ☆48Updated 5 months ago
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆13Updated 10 months ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆43Updated last month
• zzz2010 / 5UTR_Optimizer
  Code for 5UTR project
  ☆22Updated last year
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆88Updated 2 months ago
• hart-lab / drugz
  DRUGZ software
  ☆22Updated 3 years ago
• ntranoslab / esm-variants
  ☆63Updated 11 months ago
• statbiophys / OLGA
  Compute generation probabilities of CDR3 amino acid and nucleotide sequences
  ☆45Updated 3 years ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆34Updated last year
• evocellnet / funscoR
  R package for functionally scoring phosphorylation sites
  ☆18Updated 4 years ago
• gpp-rnd / rs3
  Package to Score Sequences using Rule Set 3
  ☆11Updated 6 months ago
• qmarcou / IGoR
  IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:
  ☆48Updated 2 years ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆25Updated last year
• dosorio / Peptides
  An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
  ☆79Updated 7 months ago
• mnielLab / netTCR
  predicting peptide and TCR interaction
  ☆20Updated 3 years ago
• IdoSpringer / ERGO-II
  ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction
  ☆29Updated 2 years ago
• betteridiot / seqlogo
  Python port of the R Bioconductor `seqLogo` package
  ☆30Updated last month