Alternatives and similar repositories for abstar

Users that are interested in abstar are comparing it to the libraries listed below

• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆52Updated last year
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆57Updated 3 years ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆43Updated 3 months ago
• Genentech / Absolve
  Absolve antibody variable domain sequence analysis
  ☆18Updated 7 years ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆54Updated 3 months ago
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆74Updated 2 years ago
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆19Updated 6 years ago
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆36Updated 4 years ago
• fjossinet / RNA-Science-Toolbox
  A platform to do RNA science
  ☆27Updated 4 years ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆70Updated 8 years ago
• davidhoover / DNAWorks
  Automatic oligonucleotide design for PCR-based gene synthesis
  ☆50Updated last month
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆77Updated last month
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆46Updated 2 years ago
• dosorio / Peptides
  An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
  ☆96Updated last year
• ntranoslab / esm-variants
  ☆85Updated 2 years ago
• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆44Updated last year
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆65Updated last week
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆95Updated last month
• TRON-Bioinformatics / TCLP
  an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression
  ☆12Updated last year
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated last year
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆61Updated 9 months ago
• wrf / pdbcolor
  Python code to color a PDB structure based on parameters from a multiple sequence alignment
  ☆33Updated 2 weeks ago
• FPPGroup / CodonBERT
  CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
  ☆42Updated last year
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆34Updated last year
• mgalardini / pdb2uniprot
  Convert PDB residues to their Uniprot equivalents
  ☆17Updated 5 years ago
• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated 2 years ago
• schumacherlab / STAPLER
  STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…
  ☆28Updated 8 months ago
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆50Updated last year
• hgbrian / biocolabs
  a collection of colabs useful for molecular biology
  ☆31Updated last year