brineylab / abstar
VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
☆42Updated 2 weeks ago
Alternatives and similar repositories for abstar:
Users that are interested in abstar are comparing it to the libraries listed below
- Python package and command line tool for epitope prediction☆51Updated 7 months ago
- Evolutionary conservation estimation of residues or nucleotides☆37Updated 2 years ago
- Absolve antibody variable domain sequence analysis☆16Updated 6 years ago
- HLA-I ligand predictor☆35Updated 3 months ago
- Immunoglobulin and T-Cell receptor rearrangement software☆48Updated last year
- Analysis of antibody NGS data☆12Updated 2 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆65Updated last year
- Mutation effects predicted from sequence co-variation☆63Updated 7 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆72Updated 11 months ago
- DSSPparser is an easy tool to parse dssp file, and can transform PDB format file to dssp format file by xssp,also support the tansfrom be…☆13Updated 2 years ago
- Code and data used in The Great Repertoire Project☆30Updated 3 years ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆26Updated 10 months ago
- An RNA manipulation library.☆54Updated last year
- A Python package for mapping sequence aligned data onto protein structures☆35Updated 3 years ago
- ☆24Updated last year
- PSIPRED Protein Secondary Structure Predictor☆53Updated 4 months ago
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆82Updated last year
- Collection of papers related to BCR repertoire analyses☆18Updated 3 years ago
- Peptide library design☆21Updated 4 years ago
- Pipeline for assessing the tractability of potential targets (starting from Gene IDs)☆22Updated last month
- HLA-II ligand predictor.☆41Updated last year
- scripts and facilities for in-silico mutagenesis with FoldX☆56Updated 3 months ago
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆35Updated 5 months ago
- A platform to do RNA science☆27Updated 4 years ago
- Convert PDB residues to their Uniprot equivalents☆17Updated 4 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆81Updated last year
- a collection of colabs useful for molecular biology☆31Updated last year
- Comprehensive Python client for the Uniprot REST API☆46Updated 7 months ago
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆17Updated 5 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆17Updated 2 years ago