Alternatives and similar repositories for abtools:

Users that are interested in abtools are comparing it to the libraries listed below

• brineylab / grp-paper
  Code and data used in The Great Repertoire Project
  ☆30Updated 3 years ago
• NBISweden / IgDiscover-legacy
  Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads
  ☆17Updated last year
• Genentech / Absolve
  Absolve antibody variable domain sequence analysis
  ☆16Updated 6 years ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆26Updated last month
• scharch / SONAR
  Software for Ontogenic aNalysis of Antibody Repertoires
  ☆18Updated last month
• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆42Updated 2 weeks ago
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆14Updated last year
• yana-safonova / ig_repertoire_constructor
  An algorithm for error-correction of immunosequencing Illumina MiSeq reads and immunoproteogenomic analysis
  ☆18Updated 6 years ago
• mnielLab / netTCR
  predicting peptide and TCR interaction
  ☆20Updated 4 years ago
• julianeweller / MinsePIE
  Modelling insertion efficiency for Prime Insertion Experiments
  ☆13Updated 11 months ago
• KarchinLab / HotMAPS_2016
  Detects hotspot regions for somatic mutations in 3D protein structures
  ☆2Updated last year
• RTH-tools / crisproff
  off-targeting assessment of Cas9 gRNAs
  ☆13Updated 3 years ago
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆16Updated 2 years ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆38Updated 3 weeks ago
• GreiffLab / immuneSIM
  ☆37Updated last year
• GfellerLab / PRIME
  PRedictor of IMmunogenic Epitopes
  ☆17Updated 10 months ago
• IdoSpringer / ERGO
  ERGO is a deep learing based model for predicting TCR-peptide binding.
  ☆17Updated 2 years ago
• vrmelo / SPLICE-q
  SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.
  ☆11Updated last year
• goodarzilab / SwitchFinder
  ☆16Updated 8 months ago
• Seeliglab / 2017---Deep-learning-yeast-UTRs
  Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"
  ☆15Updated 7 years ago
• mariodosreis / tai
  The tRNA adaptation index
  ☆15Updated this week
• CRISPRJWCHOI / CRISPR_toolkit
  CRISPR Indel, base edit analysis
  ☆10Updated 4 years ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆42Updated last year
• Neurotechnology-at-ETH-Zurich / siRNA_Design
  Collection of tools to retrieve siRNA (small interfering RNA) candidate sequences targeting your gene of interest from popular siRNA desi…
  ☆11Updated 2 years ago
• KarchinLab / mhcnuggets
  MHC Class I and Class II neoantigen binding prediction
  ☆28Updated 2 years ago
• khuranalab / DeepMILO
  ☆7Updated 4 years ago
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆24Updated 10 months ago
• maxwellsh / DIGDriver
  Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.
  ☆24Updated 2 years ago
• matsengrp / vampire
  🧛 Deep generative models for TCR sequences 🧛
  ☆17Updated 2 years ago
• hawkjo / freebarcodes
  FREE Divergence Error-Correcting DNA Barcodes
  ☆27Updated last month