Merge and compare structural variants across callers, samples, and platforms. Standardizes BND-heavy output from GRIDSS, SvABA, Sniffles, and more.
☆46Aug 16, 2026Updated this week
Alternatives and similar repositories for OctopuSV
Users that are interested in OctopuSV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Oct 17, 2024Updated last year
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 4 months ago
- A nextflow pipeline for calling exome CNVs☆14Updated this week
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Aug 4, 2026Updated 2 weeks ago
- Tandem Repeats Caller for LOng Reads☆17May 28, 2021Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Blazingly fast, streaming duplicate detection for NGS data☆18Aug 9, 2026Updated last week
- Toolkit for calling structural variants using short or long reads☆115Jul 14, 2026Updated last month
- nf-test utility functions☆13Updated this week
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆22Updated this week
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆28Jun 25, 2026Updated last month
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆70Updated this week
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆93Jul 29, 2026Updated 3 weeks ago
- Indel caller for DNA-seq or RNA-seq☆16Aug 8, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆37Sep 13, 2023Updated 2 years ago
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- python plotly Circos from VCF☆43Jun 20, 2024Updated 2 years ago
- Tandem repeat genotyping from long reads☆26Aug 3, 2026Updated 2 weeks ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆109Jun 25, 2026Updated last month
- Structural variant VCF annotation, duplicate removal and comparison☆38Oct 14, 2025Updated 10 months ago
- Extract methylation calls from long reads (ONT/ PacBio)☆24Aug 12, 2026Updated last week
- Jasmine: SV Merging Across Samples☆260Dec 20, 2024Updated last year
- PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT☆18Jun 24, 2026Updated last month
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆18Nov 26, 2023Updated 2 years ago
- ☆164Apr 13, 2026Updated 4 months ago
- Successor of bwa-mem for short-read alignment☆327Updated this week
- VarIant SimulatOR for short, long and linked reads☆54Oct 21, 2024Updated last year
- This is the standalone version of the EviAnn pipeline☆183Aug 11, 2026Updated last week
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆57Aug 10, 2026Updated last week
- Genotyping of paralog specific gene types☆22Nov 6, 2025Updated 9 months ago
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆45Dec 18, 2025Updated 8 months ago
- ☆45Jul 16, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- expressions on VCFs☆93Mar 17, 2026Updated 5 months ago
- POSTRE: Prediction Of STRuctural variant Effects☆29Jun 1, 2026Updated 2 months ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆25Jul 1, 2026Updated last month
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆51Aug 11, 2026Updated last week
- PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.☆18Feb 11, 2025Updated last year
- ☆24Feb 26, 2026Updated 5 months ago
- ☆14May 2, 2025Updated last year