End-to-end structural variant post-processing: unify, merge, compare, and export from SV caller.
☆43Jul 28, 2026Updated this week
Alternatives and similar repositories for OctopuSV
Users that are interested in OctopuSV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Oct 17, 2024Updated last year
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 4 months ago
- A nextflow pipeline for calling exome CNVs☆14Jul 22, 2026Updated last week
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Jul 22, 2026Updated last week
- Tandem Repeats Caller for LOng Reads☆17May 28, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Blazingly fast, streaming duplicate detection for NGS data☆17Updated this week
- Toolkit for calling structural variants using short or long reads☆115Jul 14, 2026Updated 2 weeks ago
- nf-test utility functions☆12May 22, 2026Updated 2 months ago
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆22Updated this week
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆27Jun 25, 2026Updated last month
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆69Updated this week
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆92Jul 1, 2026Updated 3 weeks ago
- Indel caller for DNA-seq or RNA-seq☆16Aug 8, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆37Sep 13, 2023Updated 2 years ago
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- python plotly Circos from VCF☆43Jun 20, 2024Updated 2 years ago
- Tandem repeat genotyping from long reads☆26Jul 2, 2026Updated 3 weeks ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆107Jun 25, 2026Updated last month
- Structural variant VCF annotation, duplicate removal and comparison☆38Oct 14, 2025Updated 9 months ago
- Extract methylation calls from long reads (ONT/ PacBio)☆24Updated this week
- Jasmine: SV Merging Across Samples☆260Dec 20, 2024Updated last year
- PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT☆18Jun 24, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆17Nov 26, 2023Updated 2 years ago
- ☆162Apr 13, 2026Updated 3 months ago
- Successor of bwa-mem for short-read alignment☆309Updated this week
- VarIant SimulatOR for short, long and linked reads☆54Oct 21, 2024Updated last year
- This is the standalone version of the EviAnn pipeline☆176Jun 24, 2026Updated last month
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆56Jul 7, 2026Updated 3 weeks ago
- Genotyping of paralog specific gene types☆22Nov 6, 2025Updated 8 months ago
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆44Dec 18, 2025Updated 7 months ago
- ☆44Jul 16, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- expressions on VCFs☆93Mar 17, 2026Updated 4 months ago
- POSTRE: Prediction Of STRuctural variant Effects☆29Jun 1, 2026Updated last month
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆24Jul 1, 2026Updated 3 weeks ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆50Updated this week
- PhenoSV: Interpretable phenotype-aware model for the prioritization of genes affected by structural variants.☆18Feb 11, 2025Updated last year
- ☆24Feb 26, 2026Updated 5 months ago
- ☆14May 2, 2025Updated last year