Merge and compare structural variants across callers, samples, and platforms. Standardizes BND-heavy output from GRIDSS, SvABA, Sniffles, and more.
☆51Sep 23, 2026Updated 3 weeks ago
Alternatives and similar repositories for OctopuSV
Users that are interested in OctopuSV are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Oct 17, 2024Updated 2 years ago
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 6 months ago
- Blazingly fast, streaming duplicate detection for NGS data☆22Oct 5, 2026Updated last week
- A nextflow pipeline for calling CNVs in probe-enriched sequencing workflows☆14Aug 17, 2026Updated 2 months ago
- VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencing☆10Sep 8, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Sep 29, 2026Updated 2 weeks ago
- Tandem Repeats Caller for LOng Reads☆17May 28, 2021Updated 5 years ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- Toolkit for calling structural variants using short or long reads☆119Aug 21, 2026Updated last month
- nf-test utility functions☆13Sep 29, 2026Updated 2 weeks ago
- python plotly Circos from VCF☆43Jun 20, 2024Updated 2 years ago
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆72Updated this week
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆23Updated this week
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆28Sep 9, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Jasmine: SV Merging Across Samples☆262Dec 20, 2024Updated last year
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆57Oct 5, 2026Updated last week
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆51Updated this week
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆98Sep 9, 2026Updated last month
- Indel caller for DNA-seq or RNA-seq☆16Aug 8, 2023Updated 3 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆42May 19, 2026Updated 4 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆38Sep 13, 2023Updated 3 years ago
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆19Nov 29, 2024Updated last year
- Accelerated short-read alignment, derived from bwa-mem2 — drop-in replacement with correctness fixes, performance improvements, single-bi…☆55Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Structural variant (SV) analysis tools☆42Jul 1, 2024Updated 2 years ago
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- ☆166Apr 13, 2026Updated 6 months ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆111Jun 25, 2026Updated 3 months ago
- Tandem repeat genotyping from long reads☆28Sep 21, 2026Updated 3 weeks ago
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 4 years ago
- Structural variant VCF annotation, filtering, duplicate removal and comparison☆38Sep 3, 2026Updated last month
- PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT☆18Updated this week
- ☆23Aug 21, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆18Nov 26, 2023Updated 2 years ago
- Annotation and Ranking of Structural Variation☆310Aug 11, 2026Updated 2 months ago
- VarIant SimulatOR for short, long and linked reads☆54Oct 21, 2024Updated last year
- VNTR annotation using motif selection☆44Sep 21, 2026Updated 3 weeks ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆40Oct 29, 2025Updated 11 months ago
- Plot structural variant signals from many BAMs and CRAMs☆574Jul 13, 2024Updated 2 years ago
- genetic variant expressions, annotation, and filtering for great good.☆274May 12, 2026Updated 5 months ago