Alternatives and similar repositories for GSEAtopics

Users that are interested in GSEAtopics are comparing it to the libraries listed below

• immunogenomics / SCENT
  Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
  ☆77Updated 4 months ago
• UMCUGenetics / primary-met-wgs-comparison
  Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.
  ☆18Updated 2 years ago
• liulab-dfci / RIMA_pipeline
  ☆86Updated last year
• karthikj89 / scgenetics
  identifying disease critical cell types and programs from single cell RNAseq
  ☆57Updated 3 years ago
• kerseviciute / aPEAR
  Enrichment Networks for Pathway Enrichment Analysis
  ☆56Updated 2 years ago
• Zaoqu-Liu / BioEnricher
  Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer
  ☆79Updated last year
• Janezjz / cellanova
  CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration
  ☆50Updated 10 months ago
• mckellardw / scMuscle
  The Cornell Single-Cell Muscle Project (scMuscle) aims to collect, analyze and provide to the research community skeletal muscle transcri…
  ☆22Updated 2 years ago
• quadbio / RNAseq_tutorial
  ☆29Updated 10 months ago
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆68Updated this week
• YutingPKU / SingleCell-Multiomics
  ☆70Updated 3 years ago
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆46Updated last year
• McGranahanLab / TcellExTRECT
  ☆47Updated 7 months ago
• JinmiaoChenLab / ezSingleCell2
  ☆56Updated last year
• FredHutch / Galeano-Nino-Bullman-Intratumoral-Microbiota_2022
  Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022
  ☆37Updated last year
• KChen-lab / METAFlux
  ☆69Updated last year
• RMolania / TCGA_PanCancer_UnwantedVariation
  ☆47Updated last year
• TheHumphreysLab / plot1cell
  ☆114Updated 5 months ago
• lijxug / CSOmapR
  R package of CSOmap(developing
  ☆14Updated 3 years ago
• ysuzukilab / Cibersortx
  Repository for Cibersortx
  ☆61Updated 4 years ago
• neurorestore / DE-analysis
  ☆39Updated 4 years ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• harbourlab / uphyloplot2
  Draw phylogenetic trees of tumor evolution
  ☆83Updated 2 years ago
• humengying0907 / InstaPrism
  InstaPrism is an R package for fast implementation of BayesPrism
  ☆37Updated last year
• UPSUTER / GEMLI
  ☆32Updated 7 months ago
• NIH-NEI / SCassist
  SCassist : An AI Based Workflow Assistant for Single-Cell Analysis
  ☆26Updated last week
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆43Updated 3 weeks ago
• mathyslab7 / ROSMAP_snRNAseq_PFC
  ☆31Updated 2 years ago
• junjunlab / bulkPseudotime
  Pseudotime Analysis for Bulk Data
  ☆16Updated last year
• JianYang-Lab / MeDuSA
  MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…
  ☆44Updated 6 months ago