An R package for single-cell and spatial omics analysis, integration, interpretation, and visualization.
☆293Aug 8, 2026Updated this week
Alternatives and similar repositories for scop
Users that are interested in scop are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆667Mar 11, 2026Updated 4 months ago
- A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.☆1,181Jul 30, 2026Updated last week
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial dat…☆321Jul 30, 2026Updated last week
- Useful functions to make your scRNA-seq plot more cool!☆397Apr 18, 2026Updated 3 months ago
- One-step to Cluster and Visualize Gene Expression Matrix☆388Jun 25, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆264Jul 8, 2026Updated last month
- ☆224Jun 13, 2026Updated last month
- plotthis is an R package that is built upon ggplot2 and other plotting packages.☆90Jul 31, 2026Updated last week
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆646Mar 4, 2026Updated 5 months ago
- ☆30Jun 25, 2025Updated last year
- The integration of single cell rank-based gene set enrichment analysis☆157Jan 14, 2026Updated 6 months ago
- fastCNV R package to detect putative CNVs in single cell and spatial transcriptomics data☆51Jul 9, 2026Updated last month
- ☆21May 6, 2025Updated last year
- single-cell Contamination Detection and Correction☆18Jan 15, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Methods to discover gene programs on single-cell data☆203Jul 21, 2026Updated 2 weeks ago
- SCIPAC (Single- Cell and bulk data-based Identifier for Phenotype Associated Cells) is a computational method that identifies cells in si…☆16Jun 30, 2024Updated 2 years ago
- A deep learning architecture for robust inference and accurate prediction of cellular dynamics☆87Jul 20, 2025Updated last year
- Scissor package☆271May 10, 2024Updated 2 years ago
- A R package for advanced single cell data viz☆75Aug 29, 2025Updated 11 months ago
- Multi-Omics integration and VIsualization in Cancer Subtyping☆149Jul 19, 2021Updated 5 years ago
- Machine learning-based integration model with elegant performance☆207Sep 23, 2025Updated 10 months ago
- Identification and Validation Robust Prognostic Biomarkers and Signatures in Solid Tumors☆62Apr 1, 2025Updated last year
- An R package for visualising cell-cell interactions☆47Mar 16, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- R package to infer biological activities from omics data using a collection of methods.☆303Dec 16, 2025Updated 7 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆241Mar 2, 2026Updated 5 months ago
- ☆49Oct 29, 2025Updated 9 months ago
- ☆128Sep 4, 2025Updated 11 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆306Jun 30, 2026Updated last month
- R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.☆276Jul 10, 2026Updated last month
- An implement R package to visualize GSEA results☆232Jul 14, 2026Updated 3 weeks ago
- Quantifying metabolism activity at the single-cell resolution☆190Feb 18, 2026Updated 5 months ago
- ☆61Aug 6, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆408Jan 21, 2026Updated 6 months ago
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆108Jul 13, 2026Updated 3 weeks ago
- Integrate Analysis and Visualization for Bioinformatic Enrichment Analyzer☆83Dec 16, 2023Updated 2 years ago
- Construct Tumor Transition Zone Microenvironment☆61Jun 25, 2025Updated last year
- ☆44Updated this week
- A Comprehensive and Integrated Framework for Transcriptomic Data Analysis☆21Mar 3, 2026Updated 5 months ago
- ☆25Jun 6, 2025Updated last year