☆20Jan 23, 2026Updated 9 months ago
Alternatives and similar repositories for scICE
Users that are interested in scICE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pathway-Level Single-Cell Functional Profiling of Individual Patient Samples☆11Aug 6, 2025Updated last year
- ☆17Jul 13, 2024Updated 2 years ago
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 11 months ago
- SIDISH: Semi-supervised Iterative Deep Learning for Identifying Single-cell High-risk Populations☆26Jul 30, 2026Updated 2 months ago
- Spatial Transcriptome Image and Expression integration enables single cell level spatial data analysis☆14Sep 7, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)☆93Apr 15, 2026Updated 6 months ago
- Reproducibility of results/figures from scvi-hub paper☆15Apr 16, 2025Updated last year
- scPair: Boosting single cell multimodal analysis by leveraging single cell atlases and implicit feature selection☆13Sep 8, 2025Updated last year
- ☆17Apr 15, 2025Updated last year
- ☆19May 25, 2026Updated 5 months ago
- A permutation-free framework for scalable, robust, and reference-based cell-cell communication analysis in single cell transcriptomics st…☆29May 23, 2026Updated 5 months ago
- CCCvelo: Decoding dynamic cell-cell communication-driven cell state transitions in spatial transcriptomics☆13Sep 14, 2026Updated last month
- A pipeline for Nanopore single cell isoform quantification in R☆14Oct 19, 2026Updated last week
- TemporalVAE: dual-objective VAE for time prediction in single cells☆13Sep 13, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Detect hierarchical structures in cell-cell communications☆18Jan 26, 2025Updated last year
- ☆68Feb 13, 2026Updated 8 months ago
- ☆48May 4, 2024Updated 2 years ago
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆17Mar 23, 2024Updated 2 years ago
- ☆34Feb 25, 2025Updated last year
- ☆14Jun 1, 2026Updated 4 months ago
- Single Cell Alternative Polyadenylation using Expectation-maximization☆11Mar 15, 2024Updated 2 years ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆23Mar 25, 2026Updated 7 months ago
- Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data☆24Sep 25, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆20Aug 25, 2026Updated 2 months ago
- ☆15Nov 5, 2025Updated 11 months ago
- ☆66Aug 6, 2025Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆32Dec 3, 2024Updated last year
- Group Technical Effects (GTE)☆16Oct 16, 2026Updated last week
- scRNAseq clustering tool☆11Apr 14, 2020Updated 6 years ago
- An R package to process and analyze transcriptomic data☆19Jun 18, 2025Updated last year
- A single-cell RNAseq differential expression analysis approach in case-control study☆10Mar 6, 2022Updated 4 years ago
- ☆11Jul 8, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Collection of R functions used in the Hochwagen Lab☆12Aug 4, 2025Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆94Oct 11, 2026Updated 2 weeks ago
- DEMINING: a stepwise computational framework to directly detect expressed DNA and RNA mutations in RNA deep sequencing data (DEMINING).☆11Jul 31, 2024Updated 2 years ago
- scPred package for cell type prediction from scRNA-seq data☆107Jan 18, 2024Updated 2 years ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆314Jun 30, 2026Updated 3 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆87Feb 17, 2025Updated last year
- Execute command line tool from R☆24Mar 17, 2026Updated 7 months ago