Single Cell Proteomics Data
☆13Oct 2, 2026Updated last month
Alternatives and similar repositories for scpdata
Users that are interested in scpdata are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single cell proteomics data processing☆34Oct 2, 2026Updated 3 weeks ago
- Spending less time on SDRF creates more time for amazing research☆10Oct 15, 2025Updated last year
- Multiplexed data-independent acquisition (plexDIA) for increasing proteomics throughput. The code is distributed by an MIT license.☆12Mar 17, 2025Updated last year
- Single-cell data analysis☆16May 24, 2026Updated 5 months ago
- Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model☆15Oct 19, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- LIMPA DAVIS Proteomics Pipeline☆22Updated this week
- DART-ID: retention time alignment and peptide identification confidence updates☆19Mar 17, 2025Updated last year
- clustering method for single-cell transcriptomics data☆11Oct 11, 2026Updated 3 weeks ago
- package for analysis of ligand and receptor connectivity between populations in scRNA-seq data☆13May 20, 2022Updated 4 years ago
- An open-source prediction framework for peptide ion collision cross section (CCS) values with python.☆16Oct 6, 2023Updated 3 years ago
- K-means clustering for large single-cell datasets☆13Feb 10, 2026Updated 8 months ago
- SPatial Omics Oxford Analysis Pipeline☆12Jul 26, 2024Updated 2 years ago
- ☆10Mar 12, 2023Updated 3 years ago
- ☆12Jun 29, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Helper Functions for LIBD Deconvolution☆11Sep 25, 2026Updated last month
- Spatial Omics Structure Analysis (sosta)☆10Sep 18, 2026Updated last month
- Search- and quantification-engine agnostic biological interpretation of proteomics data☆43Updated this week
- An R package that integrates the installation, execution, and benchmark of cutting-edge computational doublet-detection methods.☆12Dec 4, 2022Updated 3 years ago
- R package for distinguishing cells from background barcodes in droplet-based single-cell RNA-seq data☆11Apr 19, 2023Updated 3 years ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆11Mar 13, 2021Updated 5 years ago
- A Python package for unsupervised analysis of spatial (prote)omics data.☆19Updated this week
- Python package to interactively annotate histological images within a jupyter notebook☆19Oct 20, 2025Updated last year
- Gene Ontology (GO) enrichment analysis☆12Aug 7, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Efficiently compute robust markers across single-cell datasets☆13Apr 21, 2021Updated 5 years ago
- A package for comparing cell type abundances between conditions☆12Oct 14, 2026Updated 2 weeks ago
- A Python alternative to `clustree` for assessing single-cell RNA-sequencing clusters.☆20Mar 11, 2026Updated 7 months ago
- MuData-compatible storage for bioconductor's MultiAssayExperiment☆11Updated this week
- SCeptre is a python package that extends the functionalities of Scanpy to analyze multiplexed single-cell proteomics data.☆18Mar 18, 2024Updated 2 years ago
- Mixed-effect model to test differences in cell type proportions from single-cell data, in Python☆10Aug 6, 2026Updated 2 months ago
- Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease☆17Mar 23, 2024Updated 2 years ago
- Spatial neighbour-aware transcript cleanup for imaging-based spatial transcriptomics data (Xenium, MERSCOPE, CosMx). XeniumClean removes…☆21Jul 19, 2026Updated 3 months ago
- An R/Bioconductor package to identify higher-order molecular phenotypes☆19Jan 15, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Fast and flexible semi-supervised learning for peptide detection in Python☆53Sep 1, 2026Updated 2 months ago
- R package for gene selection using k-NN graphs.☆15Jun 12, 2023Updated 3 years ago
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆83Updated this week
- The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of ma…☆50Feb 6, 2026Updated 8 months ago
- A Transcriptomics-Proteomics Integration Pipeline☆23Apr 11, 2024Updated 2 years ago
- Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models☆25Sep 23, 2026Updated last month
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 11 months ago