Russel88 / DOCLinks
Dissimilarity Overlap Curve analysis
☆11Updated 2 years ago
Alternatives and similar repositories for DOC
Users that are interested in DOC are comparing it to the libraries listed below
Sorting:
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆35Updated 2 months ago
- ☆50Updated 4 years ago
- MetaCompare☆19Updated last year
- dada2 formatted nifH database☆12Updated last year
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆47Updated 11 months ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆32Updated last year
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 3 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆30Updated 7 years ago
- ☆41Updated last year
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆49Updated 4 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- code repo for mobileOG-db☆40Updated 5 months ago
- Horizontal gene transfer (HGT) identification pipeline☆63Updated 2 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆87Updated last year
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆83Updated 2 weeks ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆92Updated 2 months ago
- Microbial co-occurrence network inferred from Earth Microbiome Project☆26Updated 5 years ago
- ☆54Updated 3 months ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆18Updated 2 years ago
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆87Updated 3 weeks ago
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆62Updated 3 years ago
- ☆35Updated 5 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆71Updated last year
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆80Updated 10 months ago
- Utilities for community ecology analysis☆19Updated 5 years ago
- Various functions for analysis of microbial community data☆46Updated 3 weeks ago
- ☆12Updated last year
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆31Updated 5 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Small utility script to submit genomes to PHASTER for phage detection☆24Updated 4 years ago