Russel88 / DOCLinks
Dissimilarity Overlap Curve analysis
☆11Updated 2 years ago
Alternatives and similar repositories for DOC
Users that are interested in DOC are comparing it to the libraries listed below
Sorting:
- ☆50Updated 4 years ago
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆47Updated 10 months ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆34Updated last month
- dada2 formatted nifH database☆12Updated last year
- MetaCompare☆19Updated last year
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 3 years ago
- Code for running analyses carried out in Stegen et al. 2013, ISME☆30Updated 7 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆32Updated last year
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆49Updated 4 years ago
- ☆40Updated last year
- code repo for mobileOG-db☆40Updated 4 months ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆18Updated last year
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆87Updated last year
- ☆53Updated 3 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆71Updated last year
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆86Updated last week
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆62Updated 3 years ago
- Horizontal gene transfer (HGT) identification pipeline☆63Updated 2 years ago
- Microbial co-occurrence network inferred from Earth Microbiome Project☆25Updated 5 years ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆31Updated 5 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆77Updated 9 months ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆91Updated 2 months ago
- ARGpore2☆13Updated last year
- Various functions for analysis of microbial community data☆46Updated last week
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆82Updated 3 months ago
- ☆13Updated 4 years ago
- ☆34Updated 4 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆48Updated 2 years ago
- ☆15Updated 6 months ago