Russel88 / DOCLinks
Dissimilarity Overlap Curve analysis
☆11Updated 3 years ago
Alternatives and similar repositories for DOC
Users that are interested in DOC are comparing it to the libraries listed below
Sorting:
- ☆50Updated 4 years ago
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆35Updated 2 months ago
- MetaCompare☆19Updated last year
- dada2 formatted nifH database☆12Updated last year
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆47Updated last year
- Code for running analyses carried out in Stegen et al. 2013, ISME☆30Updated 7 years ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 3 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆51Updated 4 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆88Updated last year
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆32Updated last year
- ☆42Updated last year
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆18Updated 2 years ago
- Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)☆88Updated last month
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆63Updated 3 years ago
- ☆54Updated 4 months ago
- code repo for mobileOG-db☆41Updated last week
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆83Updated 3 weeks ago
- FUNGuild: parsing OTUs into functional guilds☆123Updated last year
- ☆35Updated 2 weeks ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆71Updated last year
- Horizontal gene transfer (HGT) identification pipeline☆63Updated 2 years ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆81Updated 10 months ago
- ☆72Updated 3 weeks ago
- Various functions for analysis of microbial community data☆47Updated last month
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆92Updated 3 months ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆31Updated 5 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆80Updated 2 months ago
- ☆16Updated 7 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆79Updated 2 years ago