Alternatives and similar repositories for DOC

Users that are interested in DOC are comparing it to the libraries listed below

• qichao1984 / NCyc
  ☆50Updated 4 years ago
• jcmcnch / eASV-pipeline-for-515Y-926R
  This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools
  ☆34Updated 3 weeks ago
• xuechunxu / DiTing
  DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data
  ☆47Updated 10 months ago
• moyn413 / nifHdada2
  dada2 formatted nifH database
  ☆12Updated last year
• minoh0201 / MetaCompare
  MetaCompare
  ☆19Updated last year
• ZengJiaxiong / Phosphorus-cycling-database
  This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.
  ☆31Updated 3 years ago
• ukaraoz / microtrait
  ☆40Updated last year
• KatariinaParnanen / MobileGeneticElementDatabase
  Contains a fasta format database of a large variety of mobile genetic elements and an annotation file
  ☆49Updated 4 years ago
• biofuture / Ublastx_stageone
  This is the source code for multisamples ARGs profiling using SARG2.0 database
  ☆46Updated 4 years ago
• stegen / Stegen_etal_ISME_2013
  Code for running analyses carried out in Stegen et al. 2013, ISME
  ☆30Updated 7 years ago
• gmteunisse / fantaxtic
  Fantaxtic - Nested Bar Plots for Phyloseq Data
  ☆31Updated last year
• pr2database / pr2database
  Protist Ribosomal Reference database (PR2) - SSU rRNA gene database
  ☆82Updated 3 months ago
• mdsufz / MuDoGeR
  MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.
  ☆87Updated last year
• DaliangNing / iCAMP1
  Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)
  ☆86Updated 7 months ago
• tobiasgf / lulu
  r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
  ☆69Updated last year
• clb21565 / mobileOG-db
  code repo for mobileOG-db
  ☆40Updated 3 months ago
• allind / EukDetect
  ☆53Updated 2 months ago
• xavierdidelot / BactDating
  Bayesian inference of ancestral dates on bacterial phylogenetic trees
  ☆91Updated last month
• AnantharamanLab / ViWrap
  A wrapper to identify, bin, classify, and predict host-viral relationship for viruses
  ☆77Updated 8 months ago
• ohlab / GRiD
  Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …
  ☆31Updated 5 years ago
• donaldtmcknight / microDecon
  An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing
  ☆18Updated last year
• Arkadiy-Garber / FeGenie
  HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes
  ☆61Updated 3 years ago
• xinehc / args_oap
  ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…
  ☆58Updated 6 months ago
• songweizhi / MetaCHIP
  Horizontal gene transfer (HGT) identification pipeline
  ☆62Updated 2 years ago
• snayfach / MicrobeCensus
  MicrobeCensus estimates the average genome size of microbial communities from metagenomic data
  ☆45Updated 5 years ago
• Russel88 / MicEco
  Various functions for analysis of microbial community data
  ☆45Updated 2 years ago
• microbma / earthnetwork
  Microbial co-occurrence network inferred from Earth Microbiome Project
  ☆25Updated 5 years ago
• sustc-xylab / ARGpore2
  ARGpore2
  ☆13Updated last year
• jlw-ecoevo / gRodon2
  ☆46Updated last week
• bjtully / BioData
  All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")
  ☆77Updated 2 years ago