dgiguer / omicplotRLinks
An R package to visualize high-throughput sequencing data.
☆12Updated 5 years ago
Alternatives and similar repositories for omicplotR
Users that are interested in omicplotR are comparing it to the libraries listed below
Sorting:
- Standard tools and protocols for MiSeq amplicon sequencing of 16S rRNA genes☆10Updated 2 years ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 5 months ago
- A shiny package for microbiome functional enrichment analysis☆36Updated 6 months ago
- De novo VIral Genome Annotator☆23Updated last year
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- Nanopore Real-Time Analysis Tool☆15Updated last year
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 9 years ago
- Processing support for Greengenes2☆13Updated 2 years ago
- ☆12Updated 8 years ago
- Microbiome research☆21Updated 3 years ago
- Do microbiome analysis with dada2 and phyloseq object☆14Updated last year
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆16Updated 3 months ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- Tools for analyzing trees☆13Updated 6 months ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆23Updated last year
- Repository of the integrated mouse gut metagenomic catalog☆20Updated 3 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- Microbiome Classifier Pipeline for Pacific Biosciences 16s Data☆11Updated last year
- A set of R functions that help faciliate a lot of tedious processing☆18Updated 7 years ago
- A pipeline for whole genome assembly☆16Updated 3 years ago
- ggtree version of plotTree.R☆18Updated 6 years ago
- ☆12Updated last year
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12Updated 4 years ago
- GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data☆17Updated last year
- A Shotgun Metagenome Annotation Pipeline☆23Updated 8 years ago