xiaolei-lab / hiblup
HIBLUP is an Integration of Statistical Methods Under BLUP Framework for Genomic Selection and Prediction
☆28Updated 3 years ago
Alternatives and similar repositories for hiblup:
Users that are interested in hiblup are comparing it to the libraries listed below
- Model training for ISwine☆14Updated 4 years ago
- ☆31Updated 3 years ago
- Data Simulation for Life Science and Breeding☆37Updated 2 weeks ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆36Updated last month
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆89Updated 5 months ago
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆52Updated 10 months ago
- Scripts and notes on how to analyse ancient DNA genotype data to understand population structure☆32Updated last year
- Code to compute the XP-CLR statistic to infer natural selection☆96Updated 2 years ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆26Updated 2 years ago
- Kinship Adjusted Multi-Loci Best Linear Unbiased Prediction☆42Updated last month
- Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies☆50Updated last month
- QTL-seq pipeline to identify causative mutations responsible for a phenotype☆55Updated 3 months ago
- A haplotype analysis toolkit for natural variation study.☆30Updated last year
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆41Updated last month
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆27Updated 8 months ago
- Useful bioinformatic scripts☆56Updated 5 months ago
- Fast analysis and visualization of latent clusters in population genetic data☆75Updated 3 years ago
- MutMap pipeline to identify causative mutations responsible for a phenotype☆53Updated 3 months ago
- Influence of algorithms, parameter choice, and feature selection on genomic prediction accuracy☆11Updated 7 years ago
- ☆43Updated last year
- Genome annotation pipeline☆58Updated 10 months ago
- VCF2Dis: A new simple and efficient software to calculate p-distance matrix and construct population phylogeny based Variant Call Forma…☆93Updated last month
- Haplotype based scans for selection☆127Updated 3 weeks ago
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆23Updated 5 months ago
- A machine learning-based genotyping tool for structural variation in short reads☆18Updated 3 weeks ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆29Updated last year
- tomato graph pangenome☆81Updated 2 years ago
- Toolkits Integrated for Genetic and Evolutionary Research☆16Updated 2 weeks ago
- Bulked-Segregant Analysis using vcf file with or without parents☆25Updated 4 months ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year