Alternatives and similar repositories for TWAS

Users that are interested in TWAS are comparing it to the libraries listed below

• shuliliu / cattleGTEx
  The cattle Genotype-Tissue Expression atlas v1
  ☆26Updated 2 years ago
• songtaogui / pan-Zea_utilities
  the miscellaneous analysis scripts used in the research of pan-Zea genome and genetics
  ☆17Updated 2 years ago
• xuechantian / Plant-LncRNA-pipline
  ☆12Updated 3 months ago
• melop / killigenomics
  Killifish genomics scripts
  ☆12Updated 4 years ago
• schmitzlab / Widespread-Long-range-Cis-Regulatory-Elements-in-the-Maize-Genome
  scripts used for processing and analyzing data in the article.
  ☆13Updated 5 years ago
• guokai8 / CandiHap
  Build haplotye and generate figures
  ☆18Updated 3 years ago
• xinkaitong / 1k-pig-genomes
  Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences
  ☆13Updated 2 years ago
• biozzq / goat-population-genetic
  Main scripts and commands used to analyze goat population genetic and domestication
  ☆20Updated 6 years ago
• yingjiexiao / maizeG2P
  ☆12Updated 4 years ago
• ZhaoTingzju / GWAS_script
  Working on cotton resequencing
  ☆11Updated 5 years ago
• evodify / genotype-files-manipulations
  Set of scripts to manupulate tab-delimited genotype calls files as well as to convert calls-files to other popular formats.
  ☆10Updated 4 years ago
• YinYuan-001 / muntjac_code
  ☆10Updated 3 years ago
• oeco28 / Cacao_Genomics
  This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes
  ☆11Updated 6 years ago
• whweve / IntAssoPlot
  ☆17Updated last year
• Menggg / BLINK
  BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
  ☆36Updated 2 months ago
• shanwai1234 / GPWAS
  Genome-Phenome Wide Association Study
  ☆15Updated 2 years ago
• zlguu / Rice_Heterosis
  ☆15Updated last year
• zhaoshuoxp / lncRNA
  De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk
  ☆10Updated last year
• HuffordLab / Wang_et_al._Demography
  Repository for the 2017 Genome Biology publication, "The interplay of demography and selection during maize domestication and expansion"
  ☆17Updated 4 years ago
• Iceylee / NGS-Pacbio
  Pipelines and scripts for analysing RNA-seq，genome and other sequecing data.
  ☆9Updated 5 years ago
• johanzi / gwas_gemma
  Perform GWAS with gemma in a simple pipeline
  ☆26Updated last month
• FarmGTEx / PigGTEx-Pipeline-v0
  ☆32Updated last year
• filippob / introduction_to_gwas
  https://filippob.github.io/introduction_to_gwas/
  ☆20Updated 11 months ago
• ShiuLab / Manuscript_Code
  Repository for code used for publications
  ☆28Updated 5 months ago
• Shuhua-Group / CPC-graph-based-NGS-pipeline
  A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data
  ☆16Updated 8 months ago
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 7 years ago
• xiekunwhy / bsa
  Bulked-Segregant Analysis using vcf file with or without parents
  ☆27Updated 5 months ago
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• yangqimeng99 / svlearn
  A machine learning-based genotyping tool for structural variation in short reads
  ☆19Updated last month
• xukaili / CandiHap
  A haplotype analysis toolkit for natural variation study.
  ☆30Updated last year