xiaolei-lab / SIMERLinks
Data Simulation for Life Science and Breeding
☆37Updated last month
Alternatives and similar repositories for SIMER
Users that are interested in SIMER are comparing it to the libraries listed below
Sorting:
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆38Updated 3 months ago
- A haplotype analysis toolkit for natural variation study.☆30Updated last year
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆42Updated 2 months ago
- Perform GWAS with gemma in a simple pipeline☆26Updated 2 months ago
- tutorial on pggb☆35Updated 6 months ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- This is a read-only mirror of the CRAN R package repository. rrBLUP — Ridge Regression and Other Kernels for Genomic Selection. Homepag…☆14Updated last year
- ☆43Updated last year
- A machine learning-based genotyping tool for structural variation in short reads☆21Updated 3 months ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- ☆22Updated 6 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆55Updated last month
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆30Updated last week
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Genome-Phenome Wide Association Study☆15Updated 2 years ago
- R code to compute the Singleton Density Score (SDS)☆31Updated 8 years ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆15Updated 2 years ago
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆21Updated 3 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆28Updated 6 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆41Updated 10 months ago
- Flexible Genotyping of Polyploids using Next Generation Sequencing Data☆29Updated 8 months ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆28Updated 4 months ago
- Scripts and procedures for detecting positively selected genes and codons in primates☆21Updated 4 years ago
- scripts for the project of seven thaliana genomes assembly☆40Updated 4 years ago
- Codes for the lettuce resequencing project in 2020☆30Updated 4 years ago
- ARG-based inference of selection using deep learning☆18Updated last year
- ☆24Updated 2 years ago
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 2 years ago
- ☆14Updated 10 months ago