Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files
☆32Jun 21, 2017Updated 9 years ago
Alternatives and similar repositories for idemp
Users that are interested in idemp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Species richness with high diversity☆68Jun 25, 2026Updated last month
- dada2 formatted nifH database☆13May 17, 2024Updated 2 years ago
- functions for analyzing phyloseq data☆28Feb 4, 2025Updated last year
- Threshold Indicator Taxa Analysis☆16Mar 3, 2026Updated 5 months ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Oct 29, 2025Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Accurate sample inference from amplicon data with single nucleotide resolution☆554Jul 31, 2026Updated 2 weeks ago
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆21Jul 21, 2026Updated 3 weeks ago
- Helper R scripts for multiple PERMANOVA tests, AICc script for PERMANOVA, etc.☆12Feb 26, 2024Updated 2 years ago
- QIIME 2 plugin wrapping DADA2☆24Jul 21, 2026Updated 3 weeks ago
- ☆19Mar 8, 2026Updated 5 months ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- diversity estimation under ecological networks☆83Jun 16, 2026Updated 2 months ago
- Functional Analysis of Metagenomes by Likelihood Inference☆17Sep 8, 2025Updated 11 months ago
- A model-based visualization method for microbiome data☆16Jul 17, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Jun 27, 2023Updated 3 years ago
- R Interfaces to Phylogenetic Software☆12Jun 25, 2026Updated last month
- ☆17Jun 26, 2025Updated last year
- ggplot-based plots for vegan☆124May 22, 2026Updated 2 months ago
- Overlap assembler of paired-end DNA sequences generated by Illumina☆23Sep 2, 2016Updated 9 years ago
- micca - MICrobial Community Analysis☆19Feb 12, 2020Updated 6 years ago
- Analogue and weighted averaging methods for palaeoecology☆14Jun 25, 2025Updated last year
- Materials for the STAMPS 2024 course at the MBL in Woods Hole, MA, USA☆13Jul 25, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆12Sep 7, 2023Updated 2 years ago
- An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM fil…☆11Sep 17, 2021Updated 4 years ago
- Creation of new training materials for Monitoring Reporting and Verification☆14Jul 15, 2025Updated last year
- IMGT segment library converted to RepSeq.IO JSON format☆14Mar 21, 2023Updated 3 years ago
- ASMNGS18 - 2018 Conference Details☆12Oct 3, 2018Updated 7 years ago
- Site to help biologists wade their way into bioinformatics.☆35Apr 7, 2026Updated 4 months ago
- microbiome R package☆318May 12, 2026Updated 3 months ago
- Various functions for analysis of microbial community data☆48Apr 15, 2026Updated 4 months ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆174Sep 4, 2025Updated 11 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Distance denoise by Entropy☆16Oct 17, 2025Updated 9 months ago
- Functions to manipulate and visualize microbial community data☆14May 29, 2026Updated 2 months ago
- ☆12Aug 6, 2026Updated last week
- phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; an…☆652Feb 27, 2026Updated 5 months ago
- Real-time species-typing visualisation for nanopore data.☆12Apr 11, 2023Updated 3 years ago
- Microbiome Classifier Pipeline for Pacific Biosciences 16s Data☆11Jan 22, 2024Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆30Jun 13, 2023Updated 3 years ago