yhwu / idemp
Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files
☆31Updated 7 years ago
Alternatives and similar repositories for idemp:
Users that are interested in idemp are comparing it to the libraries listed below
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 2 weeks ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- Speedy versions of phyloseq functions☆47Updated 11 months ago
- Compare different differential abundance and expression methods☆51Updated 3 years ago
- diversity estimation under ecological networks☆83Updated last year
- functions for analyzing phyloseq data☆26Updated last month
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆70Updated 2 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆29Updated 8 months ago
- A set of R scripts for the analysis of microbial profiles☆41Updated 10 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆64Updated last year
- Miscellaneous functions for metagenomic analysis.☆49Updated last month
- [deprecated] Please use ampvis2☆8Updated 7 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- ☆54Updated this week
- Various functions for analysis of microbial community data☆43Updated 2 years ago
- Transform files to the microtable object with microeco package☆25Updated 3 months ago
- Tools for visualising microbial community amplicon data☆67Updated 10 months ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 2 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆32Updated 4 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated 2 months ago
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆74Updated last week
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆32Updated last year
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- ☆14Updated this week
- JAMP - Just Another Metabarcoding Pipeline☆34Updated 3 years ago
- An R package for microbial community analysis in an environmental context☆66Updated 4 years ago
- SHallow shOtGUN profiler☆53Updated 3 years ago
- SourceTracker2☆70Updated 8 months ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆45Updated last month
- Species richness with high diversity☆68Updated last year