adrientaudiere / MiscMetabar
R package MiscMetabar: Miscellaneous functions for metabarcoding analysis
☆17Updated last week
Alternatives and similar repositories for MiscMetabar:
Users that are interested in MiscMetabar are comparing it to the libraries listed below
- Miscellaneous functions for metagenomic analysis.☆49Updated last month
- Look Up Guild Information for Fungi in R☆21Updated last year
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Updated last year
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆14Updated last month
- functions for analyzing phyloseq data☆26Updated last month
- Speedy versions of phyloseq functions☆47Updated 10 months ago
- Informatic Sequence Classification Trees☆14Updated 3 years ago
- R Interfaces to Phylogenetic Software☆12Updated last month
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆35Updated 5 years ago
- Various functions for analysis of microbial community data☆43Updated 2 years ago
- A web app for environmental DNA metabarcoding analysis☆10Updated 3 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 2 weeks ago
- R package for downstream analysis for anacapa eDNA pipeline☆23Updated 3 years ago
- JAMP - Just Another Metabarcoding Pipeline☆34Updated 3 years ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- diversity estimation under ecological networks☆83Updated last year
- ☆34Updated last year
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆15Updated last year
- Utilities for community ecology analysis☆18Updated 4 years ago
- A set of R scripts for the analysis of microbial profiles☆41Updated 10 months ago
- A repository for my work on rCRUX☆11Updated 8 months ago
- Species richness with high diversity☆68Updated last year
- Workshop for NGS'18 conference, Barcelona 2018☆24Updated 6 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- creating reference databases for amplicon sequencing☆34Updated this week
- ☆20Updated 2 years ago
- A comprehensive and customizable R package for microbiome analysis.☆22Updated 2 years ago
- A robust and fast clustering method for amplicon-based studies☆31Updated last year
- R package for computing alpha and beta contributional diversity metrics☆10Updated last year
- Functions for compositional analysis of high throughput sequencing☆29Updated last year