R package MiscMetabar: Miscellaneous functions for metabarcoding analysis
☆21Jul 21, 2026Updated this week
Alternatives and similar repositories for MiscMetabar
Users that are interested in MiscMetabar are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Oct 29, 2025Updated 8 months ago
- R package for downstream analysis for anacapa eDNA pipeline☆23Dec 10, 2021Updated 4 years ago
- Distance denoise by Entropy☆16Oct 17, 2025Updated 9 months ago
- EukRef curation pipeline☆13May 11, 2021Updated 5 years ago
- Look Up Guild Information for Fungi in R☆25Mar 20, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- Miscellaneous functions for metagenomic analysis.☆55May 14, 2026Updated 2 months ago
- Amplicon sequencing variants from 16s ONT R10.4 / HiFi long reads☆50Updated this week
- A python package to query different databases of boldsystems.org☆32Oct 28, 2024Updated last year
- GPU-accelerated DNA barcode classification☆14Jan 2, 2025Updated last year
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- creating reference databases for amplicon sequencing☆51Jan 13, 2026Updated 6 months ago
- REference Sequence annotation and CuRatIon Pipeline☆101Updated this week
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆33May 24, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- functions for analyzing phyloseq data☆28Feb 4, 2025Updated last year
- Species richness with high diversity☆68Jun 25, 2026Updated last month
- diversity estimation under ecological networks☆83Jun 16, 2026Updated last month
- The importance of converting relative to absolute abundance in the context of microbial ecology: Introducing the user-friendly DspikeIn R…☆17Jun 23, 2026Updated last month
- A repository for my work on rCRUX☆14Jun 21, 2024Updated 2 years ago
- Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files☆32Jun 21, 2017Updated 9 years ago
- JAMP - Just Another Metabarcoding Pipeline☆39Jan 7, 2022Updated 4 years ago
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Jun 27, 2023Updated 3 years ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆74Dec 21, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆23May 16, 2026Updated 2 months ago
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated 2 years ago
- Various functions for analysis of microbial community data☆48Apr 15, 2026Updated 3 months ago
- R Interfaces to Phylogenetic Software☆12Jun 25, 2026Updated last month
- ☆16Jun 26, 2025Updated last year
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆18Jul 31, 2025Updated 11 months ago
- R mased batch sequence downloader, with primer development and in silico evaluation capabilities☆36Oct 30, 2024Updated last year
- R package supporting interactive data access on BOLD☆25Updated this week
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆34May 29, 2024Updated 2 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Jul 17, 2026Updated last week
- ☆12Oct 7, 2019Updated 6 years ago
- Threshold Indicator Taxa Analysis☆16Mar 3, 2026Updated 4 months ago
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆86Feb 26, 2026Updated 4 months ago
- MAG Circularization Method☆33Nov 4, 2025Updated 8 months ago
- R functions to work with the GMBA Inventory v2.0☆18Feb 11, 2025Updated last year