Alternatives and similar repositories for MiscMetabar:

Users that are interested in MiscMetabar are comparing it to the libraries listed below

• vmikk / metagMisc
  Miscellaneous functions for metagenomic analysis.
  ☆49Updated 7 months ago
• shaunpwilkinson / insect
  Informatic Sequence Classification Trees
  ☆14Updated 3 years ago
• mahendra-mariadassou / phyloseq-extended
  Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…
  ☆33Updated last year
• brendanf / FUNGuildR
  Look Up Guild Information for Fungi in R
  ☆19Updated last year
• frederic-mahe / stampa
  Sequence Taxonomic Assignment by Massive Pairwise Alignments
  ☆14Updated last year
• schuyler-smith / phylosmith
  functions for analyzing phyloseq data
  ☆26Updated 2 weeks ago
• mikemc / speedyseq
  Speedy versions of phyloseq functions
  ☆46Updated 9 months ago
• Russel88 / MicEco
  Various functions for analysis of microbial community data
  ☆43Updated 2 years ago
• metabaRfactory / metabaR
  metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
  ☆14Updated 2 years ago
• gjeunen / reference_database_creator
  creating reference databases for amplicon sequencing
  ☆30Updated 2 months ago
• mblstamps / stamps2019
  Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA
  ☆35Updated 5 years ago
• VascoElbrecht / JAMP
  JAMP - Just Another Metabarcoding Pipeline
  ☆32Updated 3 years ago
• yoann-dufresne / SLIM
  A web app for environmental DNA metabarcoding analysis
  ☆10Updated 3 years ago
• adw96 / breakaway
  Species richness with high diversity
  ☆68Updated last year
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆83Updated last year
• ggloor / CoDa_microbiome_tutorial
  Workshop for NGS'18 conference, Barcelona 2018
  ☆24Updated 6 years ago
• nextgenusfs / amptk
  AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
  ☆38Updated last year
• gavinmdouglas / POMS
  Phylogenetic Organization of Metagenomic Signals (POMS)
  ☆19Updated 2 years ago
• CalCOFI / rCRUX
  A repository for my work on rCRUX
  ☆11Updated 7 months ago
• KasperSkytte / ampvis2
  Tools for visualising microbial community amplicon data
  ☆67Updated 8 months ago
• mahsa-mousavi / eDNAFlow
  ☆20Updated last year
• itsmisterbrown / microfiltR
  accessory functions for processing microbial community data
  ☆12Updated 2 years ago
• ggloor / CoDaSeq
  Functions for compositional analysis of high throughput sequencing
  ☆29Updated last year
• frederic-mahe / swarm
  A robust and fast clustering method for amplicon-based studies
  ☆31Updated last year
• yhwu / idemp
  Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files
  ☆31Updated 7 years ago
• nhanhocu / metamicrobiomeR
  An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…
  ☆33Updated 4 years ago
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆21Updated 2 years ago
• gauravsk / ranacapa
  R package for downstream analysis for anacapa eDNA pipeline
  ☆23Updated 3 years ago
• vmaffei / dada2_to_picrust
  Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)
  ☆19Updated 6 years ago
• McMahonLab / TaxAss
  16S taxonomy assignment using an ecosystem-specific database.
  ☆16Updated last year