adrientaudiere / MiscMetabar
R package MiscMetabar: Miscellaneous functions for metabarcoding analysis
☆17Updated last month
Alternatives and similar repositories for MiscMetabar:
Users that are interested in MiscMetabar are comparing it to the libraries listed below
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Updated last year
- Miscellaneous functions for metagenomic analysis.☆50Updated last month
- Informatic Sequence Classification Trees☆14Updated 3 weeks ago
- functions for analyzing phyloseq data☆27Updated 3 months ago
- Look Up Guild Information for Fungi in R☆21Updated last month
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 2 months ago
- Speedy versions of phyloseq functions☆48Updated last year
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆35Updated 5 years ago
- A web app for environmental DNA metabarcoding analysis☆10Updated 3 years ago
- diversity estimation under ecological networks☆83Updated 3 weeks ago
- R Interfaces to Phylogenetic Software☆12Updated 2 months ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆14Updated 3 months ago
- Various functions for analysis of microbial community data☆44Updated 2 years ago
- Species richness with high diversity☆68Updated 3 weeks ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 years ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- R package for downstream analysis for anacapa eDNA pipeline☆22Updated 3 years ago
- creating reference databases for amplicon sequencing☆36Updated last month
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆36Updated 9 years ago
- JAMP - Just Another Metabarcoding Pipeline☆34Updated 3 years ago
- A repository for my work on rCRUX☆11Updated 10 months ago
- ☆20Updated 2 years ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Updated 6 years ago
- Implementation of CoNet in R☆16Updated 5 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- accessory functions for processing microbial community data☆12Updated 2 years ago
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆19Updated last month
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- Microbial community analysis tools in R☆21Updated 2 years ago
- Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)☆19Updated 6 years ago