yoann-dufresne / SLIM
A web app for environmental DNA metabarcoding analysis
☆10Updated 3 years ago
Alternatives and similar repositories for SLIM:
Users that are interested in SLIM are comparing it to the libraries listed below
- Utilities for community ecology analysis☆18Updated 4 years ago
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Updated last year
- JAMP - Just Another Metabarcoding Pipeline☆32Updated 3 years ago
- ☆20Updated last year
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆13Updated 2 years ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆14Updated last year
- Miscellaneous functions for metagenomic analysis.☆47Updated 6 months ago
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆21Updated last year
- eDNA metabarcoding pipeline☆31Updated last month
- A robust and fast clustering method for amplicon-based studies☆31Updated last year
- Various functions for analysis of microbial community data☆42Updated 2 years ago
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Updated 6 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆63Updated last year
- Look Up Guild Information for Fungi in R☆19Updated last year
- functions for analyzing phyloseq data☆26Updated last week
- [deprecated] Please use ampvis2☆8Updated 7 years ago
- ☆29Updated 10 months ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated last year
- dada2 formatted nifH database☆11Updated 8 months ago
- Speedy versions of phyloseq functions☆46Updated 8 months ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆27Updated 6 months ago
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆18Updated 5 years ago
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆32Updated last year
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆30Updated this week
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆45Updated this week
- EukRef curation pipeline☆13Updated 3 years ago
- Dissimilarity Overlap Curve analysis☆11Updated 2 years ago
- PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes☆27Updated 6 months ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago