yoann-dufresne / SLIMView external linksLinks
A web app for environmental DNA metabarcoding analysis
☆11Dec 30, 2021Updated 4 years ago
Alternatives and similar repositories for SLIM
Users that are interested in SLIM are comparing it to the libraries listed below
Sorting:
- MetaWorks is a flexible multi-marker metabarcode pipeline for processing paired-end Illumina reads from raw fastq.gz files to taxonomic a…☆22Sep 19, 2023Updated 2 years ago
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆20Apr 17, 2019Updated 6 years ago
- GPU-accelerated DNA barcode classification☆13Jan 2, 2025Updated last year
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Dec 21, 2023Updated 2 years ago
- ☆13Jun 1, 2021Updated 4 years ago
- A python package to query different databases of boldsystems.org☆32Oct 28, 2024Updated last year
- PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes☆32Jan 23, 2026Updated 3 weeks ago
- ☆11Aug 26, 2022Updated 3 years ago
- A generalised, dynamic DNA reference library for metabarcoding of fishes☆18Jan 23, 2026Updated 3 weeks ago
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Jun 27, 2023Updated 2 years ago
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆16May 26, 2025Updated 8 months ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆17Jul 31, 2025Updated 6 months ago
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Sep 5, 2025Updated 5 months ago
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 3 weeks ago
- eDNA metabarcoding pipeline☆44Jan 22, 2026Updated 3 weeks ago
- creating reference databases for amplicon sequencing☆48Jan 13, 2026Updated last month
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆21Nov 14, 2025Updated 3 months ago
- Utilities for community ecology analysis☆19Oct 2, 2020Updated 5 years ago
- LoD calculator☆23Jul 11, 2019Updated 6 years ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆21Oct 17, 2023Updated 2 years ago
- Scripts for analyzing Illumina-generated environmental DNA sequence data.☆20Feb 22, 2018Updated 7 years ago
- Integrated Network Analysis Pipeline☆18Dec 19, 2024Updated last year
- ☆22Feb 23, 2023Updated 2 years ago
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆24Jul 15, 2025Updated 6 months ago
- Making notes during study 'Numerical Ecology with R second edition'☆24Aug 9, 2019Updated 6 years ago
- R package for downstream analysis for anacapa eDNA pipeline☆22Dec 10, 2021Updated 4 years ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆33Jul 12, 2022Updated 3 years ago
- Spatio-temporal trends in habitat suitability from ecological niche models☆14Feb 4, 2026Updated last week
- BIO9905MERG1 – Bioinformatics for Environmental Sequencing (DNA metabarcoding)☆11Apr 9, 2023Updated 2 years ago
- ☆15Sep 27, 2022Updated 3 years ago
- A robust and fast clustering method for amplicon-based studies☆31Mar 23, 2023Updated 2 years ago
- JAMP - Just Another Metabarcoding Pipeline☆39Jan 7, 2022Updated 4 years ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆11Oct 11, 2022Updated 3 years ago
- Written by Emily Curd (eecurd@g.ucla.edu), Jesse Gomer (jessegomer@gmail.com), Gaurav Kandlikar (gkandlikar@ucla.edu), Zack Gold (zjgold@…☆45Jan 18, 2024Updated 2 years ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Nov 18, 2023Updated 2 years ago
- Ontology-aware neural network (ONN) for microbial community sample source tracking!☆10Oct 11, 2022Updated 3 years ago
- Increased efficiency in identifying mixed pollen samples by meta-barcoding with a dual-indexing approach - Computational methods☆10Jan 19, 2022Updated 4 years ago
- R package for Ecological Networks utility functions and metrics☆10Dec 18, 2025Updated last month
- HTSlib bindings for Ruby☆11Jan 13, 2026Updated last month