R package for downstream analysis for anacapa eDNA pipeline
☆22Dec 10, 2021Updated 4 years ago
Alternatives and similar repositories for ranacapa
Users that are interested in ranacapa are comparing it to the libraries listed below
Sorting:
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆20Updated this week
- JAMP - Just Another Metabarcoding Pipeline☆39Jan 7, 2022Updated 4 years ago
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆20Apr 17, 2019Updated 6 years ago
- Multinomial Logistic-Normal Models (really fast)☆20Feb 26, 2025Updated last year
- A repository for my work on rCRUX☆12Jun 21, 2024Updated last year
- A web app for environmental DNA metabarcoding analysis☆11Dec 30, 2021Updated 4 years ago
- Miscellaneous functions for metagenomic analysis.☆53Feb 20, 2026Updated 2 weeks ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆17Jul 31, 2025Updated 7 months ago
- CROP: Clustering 16s rRNA for OTU Prediction☆13May 2, 2017Updated 8 years ago
- A robust and fast clustering method for amplicon-based studies☆31Mar 23, 2023Updated 2 years ago
- raw data from tax-credit project☆14Sep 19, 2019Updated 6 years ago
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆21Nov 14, 2025Updated 3 months ago
- Written by Emily Curd (eecurd@g.ucla.edu), Jesse Gomer (jessegomer@gmail.com), Gaurav Kandlikar (gkandlikar@ucla.edu), Zack Gold (zjgold@…☆45Jan 18, 2024Updated 2 years ago
- LoD calculator☆24Jul 11, 2019Updated 6 years ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆21Oct 17, 2023Updated 2 years ago
- Metagenomic classifier for CUDA-enabled GPUs☆16Jun 12, 2018Updated 7 years ago
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆24Jul 15, 2025Updated 7 months ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Jan 21, 2022Updated 4 years ago
- A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets☆25Apr 17, 2025Updated 10 months ago
- REference Sequence annotation and CuRatIon Pipeline☆99Feb 19, 2026Updated 2 weeks ago
- ☆23Mar 2, 2019Updated 7 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Feb 25, 2023Updated 3 years ago
- Spatio-temporal trends in habitat suitability from ecological niche models☆14Feb 4, 2026Updated last month
- BIO9905MERG1 – Bioinformatics for Environmental Sequencing (DNA metabarcoding)☆11Apr 9, 2023Updated 2 years ago
- eDNA metabarcoding pipeline☆44Jan 22, 2026Updated last month
- creating reference databases for amplicon sequencing☆48Jan 13, 2026Updated last month
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Oct 29, 2025Updated 4 months ago
- A lightweight and flexible analysis pipeline☆11Jan 22, 2026Updated last month
- Robust Aitchison PCA from sparse count data☆37Aug 17, 2022Updated 3 years ago
- Increased efficiency in identifying mixed pollen samples by meta-barcoding with a dual-indexing approach - Computational methods☆10Jan 19, 2022Updated 4 years ago
- Argument Mining Python implementation☆13Jul 28, 2023Updated 2 years ago
- Applied Quantitative Methods course at the College of Charleston☆21Feb 19, 2026Updated 2 weeks ago
- Code, figure, and data repository for: Haase et al. (2023) Nature. https://doi.org/10.1038/s41586-023-06400-1☆11Aug 10, 2023Updated 2 years ago
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- R package for Ecological Networks utility functions and metrics☆10Dec 18, 2025Updated 2 months ago
- Shiny Apps from the DOOM Lab☆11Jun 24, 2019Updated 6 years ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆13Oct 10, 2025Updated 4 months ago
- Evaluate long-term trends in the Chesapeake Bay using a Generalized Additive Modeling (GAM) approach☆12Feb 24, 2026Updated last week
- Phylogeny Enhanded Prediction of PAN-genome☆43Jul 17, 2020Updated 5 years ago