R package for downstream analysis for anacapa eDNA pipeline
☆23Dec 10, 2021Updated 4 years ago
Alternatives and similar repositories for ranacapa
Users that are interested in ranacapa are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆21Updated this week
- A repository for my work on rCRUX☆12Jun 21, 2024Updated last year
- raw data from tax-credit project☆14Sep 19, 2019Updated 6 years ago
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆20Apr 17, 2019Updated 6 years ago
- JAMP - Just Another Metabarcoding Pipeline☆39Jan 7, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Multinomial Logistic-Normal Models (really fast)☆20Feb 26, 2025Updated last year
- Miscellaneous functions for metagenomic analysis.☆53Feb 20, 2026Updated last month
- A web app for environmental DNA metabarcoding analysis☆11Dec 30, 2021Updated 4 years ago
- CROP: Clustering 16s rRNA for OTU Prediction☆13May 2, 2017Updated 8 years ago
- A robust and fast clustering method for amplicon-based studies☆30Mar 23, 2023Updated 3 years ago
- A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets☆25Apr 17, 2025Updated 11 months ago
- MGnify RESTful API☆10Feb 11, 2026Updated last month
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆17Jul 31, 2025Updated 7 months ago
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆21Nov 14, 2025Updated 4 months ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆21Oct 17, 2023Updated 2 years ago
- Making notes during study 'Numerical Ecology with R second edition'☆24Aug 9, 2019Updated 6 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Feb 25, 2023Updated 3 years ago
- Metagenomic classifier for CUDA-enabled GPUs☆17Jun 12, 2018Updated 7 years ago
- LoD calculator☆24Jul 11, 2019Updated 6 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Oct 29, 2025Updated 5 months ago
- Written by Emily Curd (eecurd@g.ucla.edu), Jesse Gomer (jessegomer@gmail.com), Gaurav Kandlikar (gkandlikar@ucla.edu), Zack Gold (zjgold@…☆45Jan 18, 2024Updated 2 years ago
- REference Sequence annotation and CuRatIon Pipeline☆98Feb 19, 2026Updated last month
- Script to download images from inaturalist.org☆28Jan 12, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Evaluate long-term trends in the Chesapeake Bay using a Generalized Additive Modeling (GAM) approach☆12Feb 24, 2026Updated last month
- ☆23Mar 2, 2019Updated 7 years ago
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆24Jul 15, 2025Updated 8 months ago
- t-distributed stochastic neighbor embedding for microbiota data☆12May 12, 2019Updated 6 years ago
- R package for computing spatial, temporal, and spatiotemporal statistics☆11Dec 5, 2019Updated 6 years ago
- Basic Sequence Taxonomy Annotator☆44May 14, 2024Updated last year
- mtGrasp: de novo reference-grade mitochondrial genome assembly and standardization☆24Updated this week
- Code, figure, and data repository for: Haase et al. (2023) Nature. https://doi.org/10.1038/s41586-023-06400-1☆11Aug 10, 2023Updated 2 years ago
- Symbulation is a software model of symbiosis built using Empirical☆15Mar 20, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Jan 21, 2022Updated 4 years ago
- ggplots for nested data☆10Jul 17, 2024Updated last year
- GenBank taxonomy processing tools☆15Jun 30, 2018Updated 7 years ago
- Gordon's Text utils Library☆10Apr 11, 2022Updated 3 years ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆14Jul 22, 2025Updated 8 months ago
- Improvement of metagenome-assembled genomes☆55Mar 17, 2020Updated 6 years ago