R package for downstream analysis for anacapa eDNA pipeline
☆23Dec 10, 2021Updated 4 years ago
Alternatives and similar repositories for ranacapa
Users that are interested in ranacapa are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆21Updated this week
- A repository for my work on rCRUX☆14Jun 21, 2024Updated 2 years ago
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆21Apr 17, 2019Updated 7 years ago
- JAMP - Just Another Metabarcoding Pipeline☆39Jan 7, 2022Updated 4 years ago
- raw data from tax-credit project☆14Sep 19, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Miscellaneous functions for metagenomic analysis.☆53May 14, 2026Updated 4 months ago
- Multinomial Logistic-Normal Models (really fast)☆20May 22, 2026Updated 3 months ago
- CROP: Clustering 16s rRNA for OTU Prediction☆13May 2, 2017Updated 9 years ago
- A web app for environmental DNA metabarcoding analysis☆11Dec 30, 2021Updated 4 years ago
- A robust and fast clustering method for amplicon-based studies☆30Mar 23, 2023Updated 3 years ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆19Jul 31, 2025Updated last year
- A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets☆27Jul 10, 2026Updated 2 months ago
- MGnify RESTful API☆10Apr 10, 2026Updated 5 months ago
- Making notes during study 'Numerical Ecology with R second edition'☆25Aug 9, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆21Oct 17, 2023Updated 2 years ago
- Mitohelper: a mitochondrial reference sequence analysis tool for fish eDNA studies☆21Jul 12, 2026Updated 2 months ago
- Metagenomic classifier for CUDA-enabled GPUs☆17Jun 12, 2018Updated 8 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Feb 25, 2023Updated 3 years ago
- Script to download images from inaturalist.org☆29Jan 12, 2026Updated 8 months ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Oct 29, 2025Updated 10 months ago
- LoD calculator☆26Jul 11, 2019Updated 7 years ago
- Written by Emily Curd (eecurd@g.ucla.edu), Jesse Gomer (jessegomer@gmail.com), Gaurav Kandlikar (gkandlikar@ucla.edu), Zack Gold (zjgold@…☆48Jan 18, 2024Updated 2 years ago
- REference Sequence annotation and CuRatIon Pipeline☆102Jul 21, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Evaluate long-term trends in the Chesapeake Bay using a Generalized Additive Modeling (GAM) approach☆12Feb 24, 2026Updated 6 months ago
- ☆24Mar 2, 2019Updated 7 years ago
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆24Jul 15, 2025Updated last year
- t-distributed stochastic neighbor embedding for microbiota data☆13May 12, 2019Updated 7 years ago
- R package for computing spatial, temporal, and spatiotemporal statistics☆12Dec 5, 2019Updated 6 years ago
- Basic Sequence Taxonomy Annotator☆46May 14, 2024Updated 2 years ago
- eDNA metabarcoding pipeline☆49Sep 10, 2026Updated last week
- Snakemake pipeline for amplicon sequencing using dada2☆10Jul 17, 2023Updated 3 years ago
- accessory functions for processing microbial community data☆12Dec 24, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- FUNGuild: parsing OTUs into functional guilds☆134Apr 26, 2024Updated 2 years ago
- ggplots for nested data☆10Jul 17, 2024Updated 2 years ago
- Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)☆18Jan 21, 2022Updated 4 years ago
- GenBank taxonomy processing tools☆15Jun 30, 2018Updated 8 years ago
- This is a read-only mirror of the CRAN R package repository. mixOmics — Omics Data Integration Project. Homepage: http://www.mixOmics.o…☆10Jun 1, 2018Updated 8 years ago
- iSDM is an open-source R package that implements a few functions useful for modeling the spatial distribution of invasive species☆17Jan 12, 2023Updated 3 years ago
- Applied Quantitative Methods course at the College of Charleston☆21Apr 2, 2026Updated 5 months ago