gauravsk / ranacapaLinks
R package for downstream analysis for anacapa eDNA pipeline
☆22Updated 3 years ago
Alternatives and similar repositories for ranacapa
Users that are interested in ranacapa are comparing it to the libraries listed below
Sorting:
- Pairwise multilevel comparison using adonis☆77Updated 2 years ago
- JAMP - Just Another Metabarcoding Pipeline☆36Updated 3 years ago
- Species richness with high diversity☆68Updated 3 months ago
- Look Up Guild Information for Fungi in R☆21Updated 3 months ago
- Miscellaneous functions for metagenomic analysis.☆50Updated last month
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 4 months ago
- Various functions for analysis of microbial community data☆45Updated 2 years ago
- diversity estimation under ecological networks☆84Updated 3 months ago
- Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data☆141Updated 5 months ago
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆35Updated 5 years ago
- 🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction☆71Updated 3 weeks ago
- ggplots for nested data☆10Updated last year
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆16Updated 5 months ago
- statdivlab's teaching materials for STAMPS @ the MBL in 2019☆12Updated 5 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆38Updated 9 years ago
- Code to run the shiny functions for the MASAME suite☆28Updated 5 years ago
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆19Updated 6 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- Utilities for community ecology analysis☆19Updated 4 years ago
- Analysis code for a manuscript on community similarity computation☆14Updated 6 years ago
- Repo for a Microbiome Protocol☆10Updated 7 years ago
- A web app for environmental DNA metabarcoding analysis☆10Updated 3 years ago
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆22Updated 2 years ago
- Informatic Sequence Classification Trees☆14Updated last month
- This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions f…☆68Updated last year
- R tools for integrating phylogenies and ecology☆35Updated last year
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Updated 2 years ago
- Examples of application of comparative methods in R☆59Updated 2 years ago
- Microbial community analysis tools in R☆22Updated 2 years ago