gauravsk / ranacapa
R package for downstream analysis for anacapa eDNA pipeline
☆22Updated 3 years ago
Alternatives and similar repositories for ranacapa:
Users that are interested in ranacapa are comparing it to the libraries listed below
- Look Up Guild Information for Fungi in R☆21Updated last month
- Species richness with high diversity☆68Updated 3 weeks ago
- Pairwise multilevel comparison using adonis☆75Updated last year
- Various functions for analysis of microbial community data☆44Updated 2 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 2 months ago
- Materials for the STAMPS 2019 course at the MBL in Woods Hole, MA, USA☆35Updated 5 years ago
- JAMP - Just Another Metabarcoding Pipeline☆34Updated 3 years ago
- Utilities for community ecology analysis☆18Updated 4 years ago
- Miscellaneous functions for metagenomic analysis.☆50Updated last month
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆14Updated 3 months ago
- Analysis code for a manuscript on community similarity computation☆14Updated 6 years ago
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆19Updated 6 years ago
- 🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction☆70Updated 11 months ago
- diversity estimation under ecological networks☆83Updated 3 weeks ago
- Microbial community analysis tools in R☆21Updated 2 years ago
- code for Numerical Ecology with R☆35Updated 6 years ago
- ggplots for nested data☆10Updated 9 months ago
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆17Updated 3 weeks ago
- A web app for environmental DNA metabarcoding analysis☆10Updated 3 years ago
- R Interfaces to Phylogenetic Software☆12Updated 2 months ago
- R tools for integrating phylogenies and ecology☆35Updated last year
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Updated last year
- Threshold Indicator Taxa Analysis☆14Updated last year
- Informatic Sequence Classification Trees☆14Updated 3 weeks ago
- Species occurrence dot maps in R☆21Updated 3 years ago
- Pipeline to analyze eDNA metabarcoding samples (PE and SE, demultiplexed, multiplexed)☆12Updated 2 years ago
- An R pakage to calculate diversity through Hill Numbers☆33Updated last year
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆36Updated 9 years ago
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆22Updated 2 years ago
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago