Alternatives and similar repositories for fungaltraits:

Users that are interested in fungaltraits are comparing it to the libraries listed below

• pmartinezarbizu / pairwiseAdonis
  Pairwise multilevel comparison using adonis
  ☆75Updated last year
• UMNFuN / FUNGuild
  FUNGuild: parsing OTUs into functional guilds
  ☆117Updated last year
• Russel88 / MicEco
  Various functions for analysis of microbial community data
  ☆43Updated 2 years ago
• brendanf / FUNGuildR
  Look Up Guild Information for Fungi in R
  ☆21Updated last month
• VascoElbrecht / JAMP
  JAMP - Just Another Metabarcoding Pipeline
  ☆34Updated 3 years ago
• DaliangNing / NST
  Normalized Stochasticity Ratio in community assembly
  ☆24Updated 6 months ago
• mahendra-mariadassou / phyloseq-extended
  Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…
  ☆33Updated last month
• defleury / Schmidt_et_al_2016_community_similarity
  Analysis code for a manuscript on community similarity computation
  ☆14Updated 6 years ago
• HullUni-bioinformatics / metaBEAT
  Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool
  ☆19Updated 6 years ago
• GuillemSalazar / EcolUtils
  Utilities for community ecology analysis
  ☆18Updated 4 years ago
• DaliangNing / iCAMP1
  Infer Community Assembly Mechanisms by Phylogenetic bin-based null model analysis (Version 1)
  ☆74Updated 2 months ago
• adw96 / breakaway
  Species richness with high diversity
  ☆68Updated last week
• metabaRfactory / metabaR
  metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
  ☆14Updated 2 months ago
• nmatzke / BioGeoBEARS
  BioGeography with Bayesian (and likelihood) Evolutionary Analysis with R Scripts
  ☆66Updated last month
• krabberod / BIO9905MERG1_V21
  BIO9905MERG1 – Bioinformatics for Environmental Sequencing (DNA metabarcoding)
  ☆10Updated 2 years ago
• adw96 / DivNet
  diversity estimation under ecological networks
  ☆83Updated last week
• ryanjw / co-occurrence
  R scripts for performing co-occurrence analyses
  ☆34Updated 10 years ago
• DominikBuchner / BOLDigger
  A python package to query different databases of boldsystems.org
  ☆30Updated 5 months ago
• bensutherland / eDNA_metabarcoding
  Pipeline to analyze eDNA metabarcoding samples (PE and SE, demultiplexed, multiplexed)
  ☆12Updated 2 years ago
• shuojiao / Community-assembly-processes-and-species-coexistences-of-agricultural-soils-microbiome
  ☆21Updated 5 years ago
• gauravsk / ranacapa
  R package for downstream analysis for anacapa eDNA pipeline
  ☆22Updated 3 years ago
• leffj / mctoolsr
  Microbial community analysis tools in R
  ☆21Updated 2 years ago
• riffomonas / distances
  ☆13Updated 2 months ago
• uit-metabarcoding / MJOLNIR
  MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R
  ☆18Updated 10 months ago
• surh / scip_barplot
  Workshop materials for SFSU SCIP 2022.
  ☆12Updated 2 years ago
• statdivlab / radEmu
  ☆54Updated 3 weeks ago
• gjeunen / reference_database_creator
  creating reference databases for amplicon sequencing
  ☆36Updated last month
• yhwu / idemp
  Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files
  ☆31Updated 7 years ago
• grunwaldlab / metacoder
  Parsing, Manipulation, and Visualization of Metabarcoding/Taxonomic data
  ☆140Updated 2 months ago
• FrederickHuangLin / ANCOMBC
  Differential abundance (DA) and correlation analyses for microbial absolute abundance data
  ☆121Updated last month