brendanf / FUNGuildRLinks
Look Up Guild Information for Fungi in R
☆23Updated 10 months ago
Alternatives and similar repositories for FUNGuildR
Users that are interested in FUNGuildR are comparing it to the libraries listed below
Sorting:
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆17Updated 6 months ago
- Various functions for analysis of microbial community data☆47Updated 4 months ago
- JAMP - Just Another Metabarcoding Pipeline☆39Updated 4 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 3 months ago
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Updated 2 years ago
- Utilities for community ecology analysis☆19Updated 5 years ago
- Miscellaneous functions for metagenomic analysis.☆53Updated last month
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Updated 5 months ago
- Repo for a Microbiome Protocol☆10Updated 7 years ago
- creating reference databases for amplicon sequencing☆46Updated 3 weeks ago
- A web app for environmental DNA metabarcoding analysis☆11Updated 4 years ago
- FUNGuild: parsing OTUs into functional guilds☆128Updated last year
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆19Updated last week
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆21Updated 2 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- functions for analyzing phyloseq data☆28Updated last year
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆72Updated 2 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- diversity estimation under ecological networks☆83Updated 6 months ago
- Pairwise multilevel comparison using adonis☆80Updated 2 years ago
- R package for downstream analysis for anacapa eDNA pipeline☆22Updated 4 years ago
- R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.☆122Updated last week
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- R scripts for performing co-occurrence analyses☆36Updated 11 years ago
- dada2 formatted nifH database☆13Updated last year
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆33Updated last year
- R tools for reconstructing metabolisms.☆14Updated this week
- Functions for compositional analysis of high throughput sequencing☆29Updated 2 years ago
- Species richness with high diversity☆68Updated 6 months ago
- Normalized Stochasticity Ratio in community assembly☆29Updated last year