brendanf / FUNGuildRLinks
Look Up Guild Information for Fungi in R
☆22Updated 6 months ago
Alternatives and similar repositories for FUNGuildR
Users that are interested in FUNGuildR are comparing it to the libraries listed below
Sorting:
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆16Updated 2 months ago
- Various functions for analysis of microbial community data☆46Updated last week
- JAMP - Just Another Metabarcoding Pipeline☆37Updated 3 years ago
- Various customs functions written to enhance the base functions of phyloseq. Most of them are used in the formation "Métagénomique 16S" p…☆33Updated 7 months ago
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Updated 2 years ago
- Utilities for community ecology analysis☆19Updated 5 years ago
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Updated last month
- Miscellaneous functions for metagenomic analysis.☆51Updated this week
- A web app for environmental DNA metabarcoding analysis☆10Updated 3 years ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆18Updated last year
- Speedy versions of phyloseq functions☆48Updated last year
- Repo for a Microbiome Protocol☆10Updated 7 years ago
- R package for downstream analysis for anacapa eDNA pipeline☆22Updated 3 years ago
- Pairwise multilevel comparison using adonis☆78Updated 2 years ago
- functions for analyzing phyloseq data☆28Updated 8 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆71Updated last year
- creating reference databases for amplicon sequencing☆40Updated last week
- TaxonTableTools - A comprehensive, platform-independent graphical user interface software to explore and visualise DNA metabarcoding data☆23Updated 2 months ago
- diversity estimation under ecological networks☆83Updated 2 months ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆18Updated this week
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Functions for compositional analysis of high throughput sequencing☆29Updated last year
- R scripts for performing co-occurrence analyses☆34Updated 10 years ago
- dada2 formatted nifH database☆12Updated last year
- A synthesis of bacterial and archaeal phenotypic trait data☆35Updated last year
- Analysis code for a manuscript on community similarity computation☆14Updated 6 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆32Updated last year
- FUNGuild: parsing OTUs into functional guilds☆120Updated last year
- Barcode demultiplex for Illumina I1, R1, R2 fastq.gz files☆32Updated 8 years ago