tobiasgf / luluLinks
r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
☆72Updated 2 years ago
Alternatives and similar repositories for lulu
Users that are interested in lulu are comparing it to the libraries listed below
Sorting:
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆85Updated 3 weeks ago
- A robust and fast clustering method for amplicon-based studies☆31Updated 2 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 5 years ago
- ☆79Updated 2 years ago
- The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or t…☆72Updated 3 years ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆93Updated 3 weeks ago
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆94Updated last year
- Massively parallel phylogenetic placement of genetic sequences☆86Updated 3 years ago
- SourceTracker2☆82Updated last year
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆106Updated 10 months ago
- ☆53Updated 5 years ago
- Compare different differential abundance and expression methods☆52Updated 3 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- Speedy versions of phyloseq functions☆48Updated last year
- Using ggtree to build phylogenetic trees☆50Updated last year
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆57Updated 3 years ago
- EukRef curation pipeline☆13Updated 4 years ago
- Automated pipeline for analyses of fungal ITS from the Illumina☆32Updated 7 months ago
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆50Updated last year
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆33Updated last year
- Parse NCBI taxonomy and accessions to find taxonomic assignments☆77Updated 5 months ago
- Making whole bacterial genome sequencing data analysis easy☆114Updated 8 months ago
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆33Updated 2 years ago
- Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data☆167Updated 3 months ago
- GraftM - Rapid community profiles from metagenomes☆47Updated last month
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Updated 9 years ago
- Automatically exported from code.google.com/p/jmodeltest2☆81Updated 4 years ago
- Sydney Phylogenetics Workshop☆67Updated 5 months ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆47Updated 5 years ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆88Updated 2 years ago