r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
☆74Dec 21, 2023Updated 2 years ago
Alternatives and similar repositories for lulu
Users that are interested in lulu are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A web app for environmental DNA metabarcoding analysis☆11Dec 30, 2021Updated 4 years ago
- A generalised, dynamic DNA reference library for metabarcoding of fishes☆19May 6, 2026Updated 2 months ago
- Make a non-redundant, comprehensive COI database from NCBI and BOLD and include customizing options☆20May 26, 2025Updated last year
- Sequence Taxonomic Assignment by Massive Pairwise Alignments☆14Jun 27, 2023Updated 3 years ago
- A python package to query different databases of boldsystems.org☆32Oct 28, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆19Jun 22, 2026Updated last month
- Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool☆20Apr 17, 2019Updated 7 years ago
- Informatic Sequence Classification Trees☆15Jan 23, 2026Updated 6 months ago
- This is the command line version of MiFish pipeline. It can also be used with any other eDNA meta-barcoding primers☆22Jul 23, 2025Updated last year
- REference Sequence annotation and CuRatIon Pipeline☆101Jul 21, 2026Updated last week
- A robust and fast clustering method for amplicon-based studies☆30Mar 23, 2023Updated 3 years ago
- CROP: Clustering 16s rRNA for OTU Prediction☆13May 2, 2017Updated 9 years ago
- A manuscript exploring the effects of taxonomic bias on microbiome differential-abundance analysis.☆12Oct 30, 2023Updated 2 years ago
- Written by Emily Curd (eecurd@g.ucla.edu), Jesse Gomer (jessegomer@gmail.com), Gaurav Kandlikar (gkandlikar@ucla.edu), Zack Gold (zjgold@…☆48Jan 18, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Distance denoise by Entropy☆16Oct 17, 2025Updated 9 months ago
- GPU-accelerated DNA barcode classification☆14Jan 2, 2025Updated last year
- R package supporting interactive data access on BOLD☆25Updated this week
- PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S rRNA, ITS and COI marker genes☆32Mar 21, 2026Updated 4 months ago
- A robust and fast clustering method for amplicon-based studies☆149Updated this week
- Miscellaneous functions for metagenomic analysis.☆55May 14, 2026Updated 2 months ago
- JAMP - Just Another Metabarcoding Pipeline☆39Jan 7, 2022Updated 4 years ago
- R package MiscMetabar: Miscellaneous functions for metabarcoding analysis☆21Jul 21, 2026Updated last week
- This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequen…☆33May 24, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆39Nov 18, 2023Updated 2 years ago
- Various functions for analysis of microbial community data☆48Apr 15, 2026Updated 3 months ago
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆86Feb 26, 2026Updated 5 months ago
- Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries" (Larsson et. al 2018).☆15Nov 3, 2020Updated 5 years ago
- Versatile open-source tool for microbiome analysis☆754Updated this week
- This site provides information on conducting reproducible science using the R language.☆13Nov 2, 2016Updated 9 years ago
- Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake☆51Mar 6, 2024Updated 2 years ago
- creating reference databases for amplicon sequencing☆51Jan 13, 2026Updated 6 months ago
- ☆24Feb 23, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Automated pipeline for analyses of fungal ITS from the Illumina☆33May 1, 2025Updated last year
- Implementation of CoNet in R☆16Oct 16, 2019Updated 6 years ago
- CyanoSeq: A curated cyanobacterial 16S rRNA database for next-generation sequencing☆16Oct 9, 2024Updated last year
- Vanilla regression methods for microbiome differential abundance analysis☆62Nov 3, 2020Updated 5 years ago
- ☆24May 6, 2020Updated 6 years ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆18Jul 31, 2025Updated 11 months ago
- Speedy versions of phyloseq functions☆48Apr 21, 2024Updated 2 years ago