Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
☆373Oct 21, 2026Updated 2 weeks ago
Alternatives and similar repositories for viv
Users that are interested in viv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A minimal Zarr image viewer based on Viv.☆201Jun 22, 2026Updated 4 months ago
- Vitessce is a visual integration tool for exploration of spatial single-cell experiments.☆273Updated this week
- Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆181Updated this week
- Bio-Formats image file format to raw format converter☆115Updated this week
- Python API and Jupyter widget for Vitessce☆67Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆263Updated this week
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆58Nov 13, 2025Updated 11 months ago
- Javascript implementation of Zarr☆154Feb 20, 2026Updated 8 months ago
- Experimental micro-service for implementing the Zarr spec over HTTP☆21Updated this week
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆74Updated this week
- Raw format to OME-TIFF converter☆59Oct 1, 2026Updated last month
- A napari plugin for zarr backed OME-NGFF images☆56Updated this week
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆221Dec 1, 2025Updated 11 months ago
- native Python dataclasses for the OME data model☆68Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆22Updated this week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆36Aug 28, 2026Updated 2 months ago
- Browse your OMERO database from within napari.☆41Updated this week
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Updated this week
- Interface to the Bioformats Java library☆15Feb 17, 2026Updated 8 months ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated last year
- Create web-based OME-Zarr galleries☆31Jul 7, 2026Updated 4 months ago
- multimodal whole slide image registration in a graph structure☆105Jul 4, 2024Updated 2 years ago
- High quality visualization for volumetric image data☆63Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A minimal Python package for reading, writing and validating OME-Zarr (meta)data☆40Updated this week
- ilastik plugin for napari☆15Mar 2, 2026Updated 8 months ago
- serve Zarr datasets via HTTP☆32Jun 12, 2023Updated 3 years ago
- Fusing image tiles with dask array's map_blocks☆31Feb 27, 2024Updated 2 years ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆183Aug 7, 2026Updated 3 months ago
- Interactive visualization of spatial omics data☆91Sep 8, 2026Updated last month
- An introduction to OME-Zarr for big bioimaging data☆29Updated this week
- Image reading, metadata management, and image writing for Microscopy images in Python☆133Oct 27, 2026Updated last week
- A library for interfacing with SpatialData stores in TS/JS☆11Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R API and htmlwidget for Vitessce☆46Aug 13, 2025Updated last year
- A CodecPipeline for zarr-python backed by the zarrs Rust crate☆81Updated this week
- Speed up coding/extending image analysis in Python.☆37Oct 12, 2026Updated 3 weeks ago
- A Python toolbox for aligning / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆135Oct 22, 2026Updated 2 weeks ago
- Plotting, unified.☆31Updated this week
- Dataset EXploration & Processing☆33May 11, 2023Updated 3 years ago
- InstanSeg is a pytorch-based cell and nucleus segmentation pipeline for fluorescence and brightfield microscopy images.☆252Sep 29, 2026Updated last month