bowang-lab / genomic-FM
☆20Updated last month
Alternatives and similar repositories for genomic-FM:
Users that are interested in genomic-FM are comparing it to the libraries listed below
- ☆56Updated 5 months ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆54Updated 2 weeks ago
- Agent self-driven repository on bio-agent papers, i.e. papers on LLM-based agents in biology and medicine.☆21Updated this week
- Create cell sentences from sequencing data☆21Updated 6 months ago
- Cell2Sentence turns scRNA-seq data into text for LLM training.☆84Updated 5 months ago
- Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors☆37Updated 8 months ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆19Updated 3 weeks ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆36Updated 4 months ago
- ☆27Updated last month
- Code for evaluating single cell foundation models scBERT and scGPT☆37Updated 5 months ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆47Updated 3 weeks ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆52Updated last month
- Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.☆62Updated last month
- ☆20Updated this week
- ☆28Updated last month
- Contextual AI models for single-cell protein biology☆79Updated last week
- Codes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis☆12Updated 2 months ago
- Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.☆77Updated 10 months ago
- Knowledge-primed neural networks☆35Updated last year
- A model developed for the generation of scRNA-seq data☆48Updated last week
- Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.☆56Updated 8 months ago
- Cell2Sentence: Teaching Large Language Models the Language of Biology☆39Updated 2 months ago
- A deep-learning framework for multi-omics integration☆24Updated last year
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆23Updated 11 months ago
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆34Updated last year
- ☆52Updated last year
- single cell foundation model for Gene network inference and more☆48Updated this week
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆35Updated 3 months ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆28Updated last month
- Computational Optimization of DNA Activity (CODA)☆55Updated last month