A Large-Scale Dataset and Framework for Genomic Foundation Model Benchmarking
☆32Apr 19, 2026Updated 2 weeks ago
Alternatives and similar repositories for genomic-FM
Users that are interested in genomic-FM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆19Aug 13, 2025Updated 8 months ago
- ☆50Mar 22, 2026Updated last month
- ☆13Jan 23, 2025Updated last year
- ☆26Jun 5, 2025Updated 11 months ago
- ☆46Sep 13, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆17Feb 15, 2026Updated 2 months ago
- This is the official repository for CardioLab. A machine and deep learning framework for the estimation and monitoring of laboratory abno…☆17Jan 12, 2026Updated 3 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆53Jan 19, 2026Updated 3 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆65Mar 20, 2026Updated last month
- Code and dataset for SNP2Vec paper☆21May 12, 2023Updated 2 years ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆40Mar 27, 2025Updated last year
- a dataloader to work with large single cell datasets from lamindb☆40Apr 10, 2026Updated 3 weeks ago
- Benchmarks for classification of genomic sequences☆174Aug 14, 2025Updated 8 months ago
- Foundation Models for Genomics & Transcriptomics☆862Feb 24, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆96Apr 3, 2026Updated last month
- A command-line tool for reading SAM/BAM files and converted them directly to bigwig files.☆21Apr 15, 2026Updated 3 weeks ago
- [NeurIPS 2024] Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA☆22Apr 2, 2025Updated last year
- Snakemake workflow for comparing E-G links to experimental data☆23Mar 9, 2026Updated last month
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆323Apr 14, 2026Updated 3 weeks ago
- For fine-tuning Enformer using paired WGS & gene expression data☆30Aug 27, 2025Updated 8 months ago
- [CIKM2025] SemiSegECG: A Multi-Dataset Benchmark for Semi-Supervised Semantic Segmentation in ECG Delineation☆19Jan 21, 2026Updated 3 months ago
- RNA-seq prediction with deep convolutional neural networks.☆237Aug 28, 2025Updated 8 months ago
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆24Jun 26, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆28Dec 15, 2021Updated 4 years ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated 11 months ago
- CheMixHub: Datasets and Benchmarks for Chemical Mixture Property Prediction☆29Feb 27, 2026Updated 2 months ago
- code to run sei and obtain sei and sequence class predictions☆113Dec 20, 2022Updated 3 years ago
- ☆16Mar 13, 2023Updated 3 years ago
- ☆24Apr 22, 2026Updated 2 weeks ago
- Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements☆28Mar 13, 2025Updated last year
- ☆28Apr 15, 2026Updated 3 weeks ago
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆62Aug 2, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆25Dec 15, 2025Updated 4 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆131Oct 31, 2024Updated last year
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆83Sep 3, 2024Updated last year
- Downloader for ENCODE☆32Oct 5, 2020Updated 5 years ago
- Valid and Powerful Machine-Learning-Assisted Genetic Association Studies☆22Jan 2, 2026Updated 4 months ago
- Evaluation suite for transcriptomic perturbation effect prediction models. Includes support for single-cell foundation models.☆37Jul 29, 2025Updated 9 months ago
- ☆20Apr 30, 2025Updated last year