Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.
☆23Aug 2, 2026Updated last month
Alternatives and similar repositories for perturbation_benchmarking
Users that are interested in perturbation_benchmarking are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Jan 23, 2025Updated last year
- ☆25Aug 20, 2024Updated 2 years ago
- ☆12Oct 4, 2021Updated 4 years ago
- Models and datasets for perturbational single-cell omics☆184Aug 19, 2022Updated 4 years ago
- ☆15Jul 24, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆96Jul 18, 2025Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Jan 11, 2025Updated last year
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆160Feb 6, 2025Updated last year
- ☆19Mar 21, 2024Updated 2 years ago
- ☆23May 21, 2026Updated 4 months ago
- Implementation of Action Matching☆54Jun 5, 2023Updated 3 years ago
- An R package to write Datalog queries and interact with a Datomic database☆11Aug 12, 2021Updated 5 years ago
- Materials for the Training and Engagement Website☆25Jan 12, 2024Updated 2 years ago
- ☆29Oct 4, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A collection of datasets well suited to teaching R to beginners☆13Apr 23, 2019Updated 7 years ago
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆29Jan 10, 2024Updated 2 years ago
- Code for scKINETICS (ISMB 2023)☆22Oct 23, 2023Updated 2 years ago
- pandasGWAS: a Python package for easy retrieval of GWAS Catalog data☆18Dec 19, 2025Updated 9 months ago
- ☆41Apr 16, 2025Updated last year
- Summary of the Carpentries pedagogic model and some lesson ideas from the community☆13Aug 26, 2020Updated 6 years ago
- OCR-Phenotype Association from Tissue-Aware Conservation Inference Toolkit☆22Sep 2, 2026Updated 3 weeks ago
- Assembly and Annotation of the Human Immune Health Atlas☆29Aug 28, 2025Updated last year
- ☆10Mar 11, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Computational Optimization of DNA Activity (CODA)☆68Apr 3, 2025Updated last year
- workshop platform provider for running docker containers on kubernetes☆19Sep 14, 2021Updated 5 years ago
- A 2-week introduction to R programming course, with a focus on public health datasets☆16Jun 18, 2026Updated 3 months ago
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- R package IReNA☆31Nov 13, 2024Updated last year
- https://www.translation.manchester.ac.uk/training/☆15Nov 8, 2023Updated 2 years ago
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆42Jun 7, 2026Updated 3 months ago
- Utilities for large scale distributed single cell data processing☆24Jan 20, 2026Updated 8 months ago
- scPerturb: A resource and a python/R tool for single-cell perturbation data☆188Feb 25, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆11Dec 8, 2023Updated 2 years ago
- Python package to perform normalization and variance-stabilization of single-cell data☆29Jul 17, 2025Updated last year
- Code repository for the paper "Geometric Scattering for Graph Data Analysis"☆14Aug 26, 2019Updated 7 years ago
- Simple scVI implementation☆13Aug 31, 2026Updated 3 weeks ago
- LLM-based gene function enrichment tool☆18Feb 19, 2025Updated last year
- ☆15Mar 28, 2025Updated last year
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆84Sep 3, 2024Updated 2 years ago