Alternatives and similar repositories for LASErMPNN

Users that are interested in LASErMPNN are comparing it to the libraries listed below

• bunzela / AIzymes
  ☆42Updated 2 weeks ago
• anirudhvenk / antibody-dpo
  ☆22Updated last month
• iamysk / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆51Updated 3 weeks ago
• Hoecker-Lab / pocketoptimizer
  Binding pocket optimization based on force fields and docking scoring functions
  ☆33Updated 3 months ago
• hongliangduan / HighFold
  ☆27Updated last year
• Ryan-Hu-Hu-Hu / GRACE
  GRACE: Generative Renaissance in Artificial Computational Enzyme Design
  ☆18Updated 6 months ago
• ibmm-unibe-ch / TemBERTure
  ☆29Updated 10 months ago
• polizzilab / NISE
  Neural Iterative Selection-Expansion using LASErMPNN and Boltz-2x
  ☆14Updated this week
• ikalvet / invrotzyme
  Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.
  ☆21Updated 4 months ago
• patrickbryant1 / RareFold
  Structure prediction and design of proteins with noncanonical amino acids
  ☆78Updated last week
• sokrypton / af2bind
  ☆50Updated 3 weeks ago
• lauramarie99 / ProtDesign2
  ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN
  ☆18Updated 4 months ago
• briandasantini / cPEPmatch
  Tool to design cyclic peptides that mimic proteins and target their binding partners.
  ☆14Updated last year
• Zhang-Runze / PackDock
  PackDock: a Diffusion Based Side Chain Packing Model for Flexible Protein-Ligand Docking
  ☆34Updated 9 months ago
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆29Updated last week
• MolecularAI / PepINVENT
  ☆40Updated 3 months ago
• KhondamirRustamov / FoldCraft
  ☆34Updated 2 weeks ago
• molecularmodelingsection / TTMD
  Python code to run Thermal Titration Molecular Dynamics (TTMD) simulations
  ☆19Updated 10 months ago
• ikalvet / heme_binder_design
  ☆9Updated last year
• ZhuofanShen / Rosetta-Enzyme-Design-Pipeline
  ☆9Updated 2 weeks ago
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆33Updated 8 months ago
• KexinZhangResearch / PhysDock
  Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction
  ☆63Updated 3 months ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆36Updated 2 weeks ago
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆22Updated last year
• ELELAB / PDBminer
  scripts to find PBD structures for cancer driver proteins
  ☆31Updated 4 months ago
• ComputArtCMCG / ProBID-NET
  ☆14Updated last month
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆39Updated last year
• darrenjhsu / tiny_IFD
  Lightweight induced fit docking
  ☆21Updated 2 years ago
• huhlim / alphafold-multistate
  ☆40Updated last year
• Zuricho / AlphaFold3_Result_Visualize
  A convinent tool to visualize AlphaFold 3 prediction results with PyMOL and matplotlib
  ☆18Updated last year