Alternatives and similar repositories for ProDomino

Users that are interested in ProDomino are comparing it to the libraries listed below

• snufoodbiochem / Alphafold3_tools
  ☆25Updated 11 months ago
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆66Updated last month
• bunzela / AIzymes
  ☆64Updated 2 months ago
• LAnAlchemist / Pseudocycle_small_molecule_binder
  Small_molecule_binder_design_use_pseudocycles
  ☆23Updated last year
• regeneron-mpds / propermab
  ☆43Updated 9 months ago
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆73Updated this week
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆65Updated 10 months ago
• Ryan-Hu-Hu-Hu / GRACE
  GRACE: Generative Renaissance in Artificial Computational Enzyme Design
  ☆19Updated last year
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆69Updated 6 months ago
• polizzilab / LASErMPNN
  All-Atom (Including Hydrogen!) Ligand-Conditioned Protein Sequence Design & Sidechain Packing Model
  ☆25Updated 3 weeks ago
• sokrypton / af2bind
  ☆54Updated last month
• Kuhlman-Lab / evopro
  ☆93Updated 2 months ago
• Jfeldman34 / AF3Complex
  ☆52Updated 6 months ago
• pfizer-opensource / pfabnet-viscosity
  ☆16Updated 3 years ago
• MinchaoFang / HalluDesign
  HalluDesign, a hallucination-driven all-atom framework for the iterative co-optimization and co-design of protein sequences and structure…
  ☆59Updated this week
• danny305 / StabilityOracle
  ☆29Updated 3 months ago
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆25Updated 2 years ago
• gfzhou / OpenVS
  Codes and scripts for "An artificial intelligence accelerated virtual screening platform for drug discovery"
  ☆64Updated last year
• samuelmurail / af_analysis
  Analysis of alphafold and colabfold results
  ☆32Updated 2 weeks ago
• cytokineking / FreeBindCraft
  BindCraft modified to make PyRosetta use and installation optional: no license needed
  ☆112Updated last month
• ikalvet / invrotzyme
  Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.
  ☆26Updated 10 months ago
• ELELAB / RosettaDDGPrediction
  ☆84Updated last month
• ShuklaGroup / esmdynamic
  ESMDynamic repo
  ☆22Updated last month
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆50Updated 3 months ago
• baker-laboratory / CA_RFDiffusion
  ☆75Updated 7 months ago
• liuyf020419 / SCUBA-D
  ☆61Updated last year
• Alex-Abrudan / DynamicMPNN
  ☆41Updated 5 months ago
• BIMSBbioinfo / PocketVina
  GPU-accelerated protein-ligand docking with automated pocket detection, exploring through multi-pocket conditioning. Official Implementa…
  ☆68Updated last month
• huhlim / alphafold-multistate
  ☆42Updated last year
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆180Updated last week