Alternatives and similar repositories for ProDomino

Users that are interested in ProDomino are comparing it to the libraries listed below

• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆65Updated 2 months ago
• bunzela / AIzymes
  ☆55Updated last month
• polizzilab / LASErMPNN
  All-Atom (Including Hydrogen!) Ligand-Conditioned Protein Sequence Design & Sidechain Packing Model
  ☆19Updated last month
• DunbrackLab / IPSAE
  Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
  ☆96Updated 5 months ago
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆23Updated last year
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆67Updated 4 months ago
• Ryan-Hu-Hu-Hu / GRACE
  GRACE: Generative Renaissance in Artificial Computational Enzyme Design
  ☆19Updated 8 months ago
• LAnAlchemist / Pseudocycle_small_molecule_binder
  Small_molecule_binder_design_use_pseudocycles
  ☆20Updated 10 months ago
• drhicks / Kejia_peptide_binders
  code for IDR binding paper 2025
  ☆51Updated 7 months ago
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆34Updated this week
• snufoodbiochem / Alphafold3_tools
  ☆23Updated 7 months ago
• regeneron-mpds / propermab
  ☆35Updated 5 months ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆43Updated last month
• ELELAB / RosettaDDGPrediction
  ☆75Updated 7 months ago
• meneshail / TopoDiff
  Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"
  ☆37Updated last month
• bene837 / af2seq
  ☆44Updated last year
• Alex-Abrudan / DynamicMPNN
  ☆34Updated last month
• lauramarie99 / ProtDesign2
  ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN
  ☆21Updated 6 months ago
• sokrypton / af2bind
  ☆49Updated 2 months ago
• KexinZhangResearch / PhysDock
  Physics-Guided All-Atom Diffusion Model for Accurate Protein-Ligand Complex Prediction
  ☆77Updated 3 weeks ago
• pfizer-opensource / pfabnet-viscosity
  ☆14Updated 2 years ago
• baker-laboratory / CA_RFDiffusion
  ☆71Updated 3 months ago
• cytokineking / FreeBindCraft
  BindCraft modified to make PyRosetta use and installation optional: no license needed
  ☆72Updated this week
• Kuhlman-Lab / evopro
  ☆87Updated last month
• danny305 / StabilityOracle
  ☆28Updated last year
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆66Updated 2 months ago
• v-mikhaylov / tfold-release
  TFold v1.0
  ☆31Updated last year
• GMdSilva / gms_natcomms_1705932980_data
  Data sharing for High-throughput Prediction of Changes in Protein Conformational Distributions with Subsampled AlphaFold2
  ☆39Updated last year
• samuelmurail / af_analysis
  Analysis of alphafold and colabfold results
  ☆31Updated 2 months ago
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆53Updated 9 months ago