Alternatives and similar repositories for MMCD

Users that are interested in MMCD are comparing it to the libraries listed below

• EureKaZhu / DiffAffinity
  Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)
  ☆35Updated last year
• JocelynSong / SurfPro
  ☆27Updated 2 months ago
• SIAT-code / MASSA
  ☆23Updated last year
• LirongWu / PSC-CPI
  Code for AAAI 2024 paper "PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein In…
  ☆28Updated 3 months ago
• THUNLP-MT / MEAN
  This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.
  ☆95Updated 2 years ago
• yuanqm55 / GraphPPIS
  Protein-protein interacting site predictor using deep graph convolutional network
  ☆12Updated 2 years ago
• THUNLP-MT / GET
  This repo contains the codes for our paper "Generalist Equivariant Transformer Towards 3D Molecular Interaction Learning" (ICML 2024).
  ☆30Updated 8 months ago
• wrab12 / diff-amp
  ☆14Updated last year
• biomed-AI / GraphPPIS
  ☆52Updated 10 months ago
• DeepGraphLearning / ESM-GearNet
  ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
  ☆100Updated last year
• luost26 / RDE-PPI
  Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)
  ☆58Updated 11 months ago
• zaixizhang / FLAG
  Implementation of ICLR23 paper "Molecule Generation for Target Protein Binding with Structural Motifs"
  ☆66Updated last year
• LirongWu / Prompt-DDG
  Code for ICML 2024 paper "Learning to Predict Mutational Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical P…
  ☆41Updated 7 months ago
• Ced3-han / PepFlowww
  Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)
  ☆81Updated last week
• ml4bio / RiboDiffusion
  ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models
  ☆47Updated 6 months ago
• BioinfoMachineLearning / ATOMRefine
  3D equivariant graph transformer for all-atom refinement of protein tertiary structures
  ☆26Updated last year
• CMACH508 / KGDiff
  Towards Explainable Target-Aware Molecule Generation with Knowledge Guidance
  ☆31Updated last year
• HySonLab / Protein_Pretrain
  Multimodal Pretraining for Unsupervised Protein Representation Learning
  ☆22Updated 10 months ago
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆109Updated 3 months ago
• OdinZhang / SurfGen
  SurfGen: Learning on Topological Surface and Geometric Structure for 3D Molecular Generation
  ☆66Updated 6 months ago
• zhengkangjie / ESM-AA
  ☆71Updated 3 months ago
• ai4protein / ProtSSN
  🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…
  ☆64Updated 3 weeks ago
• blt2114 / ProtDiff_SMCDiff
  Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…
  ☆74Updated last year
• DeepGraphLearning / SiamDiff
  Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)
  ☆40Updated last year
• bowen-gao / DrugCLIP
  [NeurIPS 2023] DrugCLIP: Contrastive Protein-Molecule Representation Learning for Virtual Screening
  ☆86Updated last year
• ZhonghuiGu / HEAL
  ☆53Updated 9 months ago
• ykiiiiii / GraDe_IF
  Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)
  ☆61Updated 10 months ago
• A4Bio / ADesigner
  The official implementation of the AAAI'24 paper Cross-Gate MLP with Protein Complex Invariant Embedding is A One-Shot Antibody Designer.
  ☆11Updated last year
• admislf / MINN-DTI
  Effective drug-target interaction prediction with mutual interaction neural network
  ☆32Updated 3 years ago
• bzho3923 / ProtLGN
  ☆30Updated 9 months ago