Alternatives and similar repositories for PLMGraph-Inter:

Users that are interested in PLMGraph-Inter are comparing it to the libraries listed below

• tommyhuangthu / EvoEF2
  a fast and accurate physical energy function extended from EvoEF for protein sequence design
  ☆25Updated last year
• PKUliujl / GeoSeqBuilder
  ☆25Updated last month
• dtischer / trdesign-motif
  Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…
  ☆16Updated 3 years ago
• Furman-Lab / PatchMAN
  ☆26Updated 7 months ago
• bigict / ProDESIGN-LE
  An accurate and efficient protein sequence design approach
  ☆24Updated last week
• Merck / BioPhi-2021-publication
  This repository contains scripts, data and jupyter notebooks used to produce the evaluation results in the BioPhi 2021 publication
  ☆15Updated 2 years ago
• CarbonMatrixLab / immunefold
  Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning
  ☆21Updated last week
• danny305 / StabilityOracle
  ☆24Updated 9 months ago
• Kuhlman-Lab / alphafold3
  Kuhlman Lab Installation of AlphaFold3
  ☆23Updated 2 months ago
• jsunn-y / ALDE
  Active Learning-Assisted Directed Evolution for Protein Engineering
  ☆42Updated 4 months ago
• wells-wood-research / de-stress
  DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
  ☆22Updated 3 weeks ago
• AIforGreatGood / biotransfer
  Machine learning-driven antibody design
  ☆54Updated last year
• Rocklin-Lab / cdna-display-proteolysis-pipeline
  ☆23Updated last year
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆30Updated 7 months ago
• sokrypton / roscon2024
  Tutorial files
  ☆11Updated 7 months ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆34Updated 3 months ago
• AbSciBio / igdesign
  ☆34Updated 2 months ago
• oxpig / PLAbDab
  The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…
  ☆24Updated 8 months ago
• Sanofi-Public / LMR-SurfaceID
  Repo contains source code of the SurfaceID paper
  ☆21Updated last year
• JosePereiraUA / rosetta-scripts
  Some Rosetta Scripts that allow for various simple tasks
  ☆13Updated 5 years ago
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆29Updated last week
• violet-sto / Bridge-IF
  Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"
  ☆12Updated last week
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆18Updated 2 months ago
• swanss / FragFold
  ☆32Updated last month
• LongxingCao / pymol_scripts
  bakerlab pymol scripts
  ☆21Updated 5 years ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆52Updated last month
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆21Updated last year
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆42Updated 3 months ago
• psalveso / pyRIF
  Using Rotamer Interaction Fields from RIFGen/Dock in python
  ☆16Updated 3 years ago
• SNU-CSSB / RF2-Lite
  ☆25Updated 9 months ago