ChengfeiYan / PLMGraph-InterLinks
A program fror inter-protein contact prediction from structures of interacting proteins
☆19Updated last year
Alternatives and similar repositories for PLMGraph-Inter
Users that are interested in PLMGraph-Inter are comparing it to the libraries listed below
Sorting:
- Machine learning-driven antibody design☆60Updated 2 years ago
- Graph Network for protein-protein interface including language model features☆32Updated last year
- ☆26Updated last week
- Complete saturation mutagenesis of a protein using ESM☆11Updated last year
- Kuhlman Lab Installation of AlphaFold3☆29Updated 2 months ago
- Physical energy function for protein sequence design☆31Updated 2 years ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆40Updated 2 months ago
- An accurate and efficient protein sequence design approach☆24Updated 4 months ago
- Tutorial files☆11Updated last year
- ☆23Updated 4 years ago
- This repository contains scripts, data and jupyter notebooks used to produce the evaluation results in the BioPhi 2021 publication☆17Updated 2 years ago
- Fragment binding prediction with ColabFold☆35Updated 4 months ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 4 years ago
- ☆25Updated 2 years ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Updated last month
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆30Updated last year
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆17Updated last year
- Computationally Restoring the Potency of a Clinical Antibody☆18Updated last year
- Machine learning prediction of enzyme optimum pH☆44Updated 3 months ago
- DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.☆26Updated 5 months ago
- Code for deep learning guided design of dynamic proteins☆30Updated last year
- code for IDR binding paper 2025☆39Updated 5 months ago
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 3 years ago
- GTalign, high-performance protein structure alignment, superposition and search☆48Updated this week
- Python package to manage protein structures and their annotations☆43Updated last year
- This repository contains the stand-alone tool for MusiteDeep server☆34Updated 4 years ago
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆38Updated 4 years ago
- Making Protein folding accessible to all!☆22Updated last year
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆27Updated last year
- ☆13Updated 2 years ago