A program fror inter-protein contact prediction from structures of interacting proteins
☆21Jun 1, 2024Updated last year
Alternatives and similar repositories for PLMGraph-Inter
Users that are interested in PLMGraph-Inter are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Complete saturation mutagenesis of a protein using ESM☆16Feb 20, 2024Updated 2 years ago
- ☆37Aug 28, 2023Updated 2 years ago
- GPT-based protein language model for PTM site prediction☆19Aug 11, 2024Updated last year
- ☆118Dec 7, 2022Updated 3 years ago
- Visualize structure data from Biotite with PyMOL☆26Mar 16, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆18Mar 16, 2025Updated last year
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆50Mar 25, 2026Updated 2 weeks ago
- Official repository for "Plug & Play Directed Evolution for Proteins with Gradient-Based Discrete MCMC"☆12Jul 18, 2023Updated 2 years ago
- Structural space exploration of AlphaFold DB☆12Oct 8, 2021Updated 4 years ago
- An Interface-Predicting Language Model for Designing Peptide-Guided Protein Degraders☆16Sep 10, 2024Updated last year
- Graph Network for protein-protein interface including language model features☆34Mar 26, 2024Updated 2 years ago
- ZDOCK predictions and PDB structures in C++ and Python☆14Jan 1, 2024Updated 2 years ago
- Metal and Water prediction☆13Feb 5, 2025Updated last year
- Performs BLAST on compressed proteomic data.☆17Jun 15, 2015Updated 10 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Protein common interface databases☆10Apr 13, 2019Updated 6 years ago
- Semantic Segmentor for Protein Structures.☆11Dec 20, 2021Updated 4 years ago
- ☆81Jun 29, 2025Updated 9 months ago
- Python package for handling ModelCIF mmCIF and BinaryCIF files☆13Updated this week
- Bayesian Active Learning for Optimization and Uncertainty Quantification with Applications to Protein Docking☆13Apr 28, 2021Updated 4 years ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆102Dec 10, 2025Updated 4 months ago
- DeepContact Software☆26Jun 16, 2018Updated 7 years ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆129Feb 26, 2025Updated last year
- Deciphering protein evolution and fitness landscapes with latent space models☆37Nov 2, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Structure-Informed Protein Language Model☆38Feb 15, 2024Updated 2 years ago
- ☆16Dec 10, 2024Updated last year
- Docking benchmark 5 - cleaned and ready to use for HADDOCK☆14Updated this week
- Program to plot a Ramachandran plot of all dihedral angles from a given PDB file. Background is empirically generated from the peptides …☆13Feb 25, 2025Updated last year
- Kdrew's scripts for handling protein complex map data☆14Jun 12, 2025Updated 9 months ago
- Deep residual neural network for protein contact/distance prediction developed by Xu group☆79Sep 13, 2020Updated 5 years ago
- ☆74Feb 13, 2026Updated last month
- Fine-tuning Boltz-1 for domain knowledge adaption☆27Apr 29, 2025Updated 11 months ago
- This repository contains scripts, data and jupyter notebooks used to produce the evaluation results in the BioPhi 2021 publication☆17Jan 2, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- MaveDB database web application☆13Nov 17, 2023Updated 2 years ago
- Tutorial files☆12Aug 7, 2024Updated last year
- A compilation of deep learning methods for protein design☆97Nov 5, 2022Updated 3 years ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆96Apr 24, 2024Updated last year
- JAX translation of boltz☆26Aug 4, 2025Updated 8 months ago
- Run AlphaFold2 (and multimer) step by step☆39Apr 23, 2022Updated 3 years ago
- Example files for Colvars module: https://github.com/Colvars/colvars☆13Dec 7, 2021Updated 4 years ago