Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab
☆11Oct 16, 2022Updated 3 years ago
Alternatives and similar repositories for pyrosetta_viewer3d
Users that are interested in pyrosetta_viewer3d are comparing it to the libraries listed below
Sorting:
- SLIP is a sandbox environment for engineering protein sequences with synthetic fitness functions.☆21Jan 17, 2024Updated 2 years ago
- Some scripts that I keep using over and over.☆21Jul 5, 2025Updated 7 months ago
- ELViM is a method for visualizing the energy landscapes of biomolecules simulations.☆12Aug 18, 2025Updated 6 months ago
- Demos of many Rosetta applications☆22Jun 10, 2025Updated 8 months ago
- Iterative masking algorithm on MSA Transformer to generate synthetic sequences☆28Jan 17, 2024Updated 2 years ago
- bakerlab pymol scripts☆26Feb 6, 2020Updated 6 years ago
- ☆13May 26, 2022Updated 3 years ago
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆18Mar 16, 2025Updated 11 months ago
- Bayesian Optimization with Pretrained Protein Sequence Models☆56Jul 27, 2024Updated last year
- A high performance drop-in replacement for Biotite's PDBFile.☆41May 27, 2025Updated 9 months ago
- Metrics to evaluate distributional coverage of generative models of protein structures.☆19Aug 13, 2025Updated 6 months ago
- ☆15Jun 3, 2025Updated 8 months ago
- ☆37Oct 16, 2024Updated last year
- Ultra-fast in-silico structure mutation☆36Apr 9, 2025Updated 10 months ago
- ☆18Mar 13, 2024Updated last year
- TMol☆53Updated this week
- Implementation of Protein Invariant Point Packer (PIPPack)☆35May 28, 2024Updated last year
- Code for our paper "Protein sequence design with a learned potential"☆34Aug 5, 2021Updated 4 years ago
- Repo for the publication titled: "Key Interaction Networks: Identifying Evolutionarily Conserved Non-Covalent Interaction Networks Across…☆18Nov 14, 2023Updated 2 years ago
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Jan 17, 2025Updated last year
- Design a local part of a protein☆20Jan 12, 2023Updated 3 years ago
- Structure-conditioned masked language modeling for protein sequence design☆71Jan 31, 2024Updated 2 years ago
- Python code to run Thermal Titration Molecular Dynamics (TTMD) simulations☆20Updated this week
- LMetalSite: alignment-free metal ion-binding site prediction from protein sequence through pretrained language model and multi-task learn…☆19Oct 23, 2025Updated 4 months ago
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆18Feb 8, 2024Updated 2 years ago
- ☆57Jul 22, 2025Updated 7 months ago
- Collection of Python scripts to setup and run simulations with OpenMM☆17May 22, 2020Updated 5 years ago
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"