BobbyLangan / DeNovoDesignofBioactiveProteinSwitchesLinks
Code used in the manuscript for De Novo Design of Bioactive Protein Switches
☆16Updated 6 years ago
Alternatives and similar repositories for DeNovoDesignofBioactiveProteinSwitches
Users that are interested in DeNovoDesignofBioactiveProteinSwitches are comparing it to the libraries listed below
Sorting:
- Rosetta FunFolDes – a general framework for the computational design of functional proteins.☆21Updated 6 years ago
- ☆18Updated 7 years ago
- This repo contains the collection of codes to find designer interfacial mutations☆17Updated 2 years ago
- Some scripts that I keep using over and over.☆20Updated 3 months ago
- Bayesian Optimization with Pretrained Protein Sequence Models☆56Updated last year
- PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.☆30Updated 2 years ago
- A DDG benchmark capture containing the benchmark dataset and benchmarked protocol captures.☆17Updated 9 years ago
- Physical energy function for protein sequence design☆33Updated 2 years ago
- Web cards/apps describing peptides☆30Updated 2 years ago
- ☆29Updated 5 years ago
- Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing☆23Updated 4 years ago
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆36Updated 4 years ago
- A surface-based deep learning approach for the prediction of ligand binding sites on proteins☆44Updated 2 years ago
- Pytorch implementation of Pocket2Drug: a generative deep learning model to predict binding drugs for ligand-binding sites.☆22Updated 3 years ago
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆53Updated 3 years ago
- Parametric Building of de novo Functional Topologies☆44Updated 3 years ago
- ☆15Updated 5 years ago
- A collection of tools that generate and analyse side-chain rotamer libraries☆10Updated this week
- Tutorial files☆11Updated last year
- ☆30Updated 4 months ago
- some tools for working with protein (PDB) files in tensorflow☆11Updated 6 years ago
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆18Updated last year
- ☆36Updated last year
- Code for our paper "Protein sequence design with a learned potential"☆34Updated 4 years ago
- ☆32Updated last year
- ☆18Updated last year
- Code for designing biased protein states☆14Updated 3 months ago
- Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure☆52Updated 7 months ago
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆29Updated last year
- dMaSIF implementation for google colab☆33Updated 2 years ago