Alternatives and similar repositories for DeNovoDesignofBioactiveProteinSwitches

Users that are interested in DeNovoDesignofBioactiveProteinSwitches are comparing it to the libraries listed below

• LPDI-EPFL / FunFolDesData
  Rosetta FunFolDes – a general framework for the computational design of functional proteins.
  ☆21Updated 6 years ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆20Updated 4 months ago
• matteofigliuzzi / bmDCA
  ☆18Updated 7 years ago
• CSB-KaracaLab / prot-on
  This repo contains the collection of codes to find designer interfacial mutations
  ☆17Updated 2 years ago
• tommyhuangthu / EvoEF2
  Physical energy function for protein sequence design
  ☆33Updated 2 years ago
• ur-whitelab / wazy
  Bayesian Optimization with Pretrained Protein Sequence Models
  ☆56Updated last year
• ur-whitelab / peptide-dashboard
  Web cards/apps describing peptides
  ☆30Updated 2 years ago
• Kortemme-Lab / ddg
  A DDG benchmark capture containing the benchmark dataset and benchmarked protocol captures.
  ☆17Updated 9 years ago
• wells-wood-research / PDBench
  PDBench is a dataset and software package for evaluating fixed-backbone sequence design algorithms.
  ☆30Updated 2 years ago
• soedinglab / pdbx
  pdbx is a parser module in python for structures of the protein data bank in the mmcif format
  ☆29Updated last year
• sokrypton / tf_proteins
  some tools for working with protein (PDB) files in tensorflow
  ☆11Updated 6 years ago
• LPDI-EPFL / topobuilder
  Parametric Building of de novo Functional Topologies
  ☆44Updated 3 years ago
• bwicky / oligomer_hallucination
  ☆36Updated last year
• ba-lab / pdnet
  PDNET: A fully open-source framework for deep learning protein real-valued distances
  ☆36Updated 4 years ago
• nanand2 / protein_seq_des
  Code for our paper "Protein sequence design with a learned potential"
  ☆34Updated 4 years ago
• strauchlab / iNNterfaceDesign
  ☆20Updated 3 years ago
• LPDI-EPFL / Bottom-up-de-novo-design
  ☆15Updated 5 years ago
• agrybauskas / rotag
  A collection of tools that generate and analyse side-chain rotamer libraries
  ☆10Updated last week
• emmijokinen / mgpfusion
  mGPfusion is a Gaussian process based method for predicting stability changes upon single and multiple mutations of proteins that comple…
  ☆15Updated 7 years ago
• dohlee / antiberty-pytorch
  An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.
  ☆25Updated last year
• RosettaCommons / Rosetta-DL
  A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons
  ☆36Updated 3 years ago
• Graylab / deepH3-distances-orientations
  ☆35Updated 4 years ago
• ElwynWang / DeepFragLib
  ☆29Updated 5 years ago
• Faezov / PDBrenum
  ☆30Updated 6 months ago
• ahaldane / Mi3-GPU
  ☆18Updated 8 months ago
• haddocking / arctic3d
  Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural information
  ☆32Updated 2 weeks ago
• clami66 / AF_unmasked
  Source code and examples for AlphaFold Unmasked
  ☆75Updated last month
• sokrypton / roscon2024
  Tutorial files
  ☆12Updated last year
• Furman-Lab / Peptide_docking_with_AF2_and_RosettAfold
  Code and data used in https://doi.org/10.1101/2021.08.01.454656
  ☆54Updated 3 years ago
• sarisabban / RamaNet
  Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure
  ☆52Updated 8 months ago