uagaug / DeNovoHeterodimers
Scripts and data deposition for de novo heterodimers manuscript
☆11Updated 6 years ago
Alternatives and similar repositories for DeNovoHeterodimers:
Users that are interested in DeNovoHeterodimers are comparing it to the libraries listed below
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Updated 3 years ago
- Making Protein folding accessible to all!☆21Updated last year
- A Motif Hash Based Method for Matching Crosslinkers into Peptides and Proteins☆17Updated last year
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆48Updated this week
- Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.☆11Updated 4 years ago
- Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file☆29Updated 10 months ago
- The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody s…☆24Updated 7 months ago
- ☆31Updated last year
- ☆24Updated 6 months ago
- Rosetta Funclib☆21Updated 4 years ago
- ☆19Updated 2 years ago
- De novo design of small molecule binding sites into proteins☆13Updated 3 years ago
- PyDock Tutorial☆30Updated 6 years ago
- ☆25Updated 2 weeks ago
- DLPacker☆29Updated 5 months ago
- Tutorial files☆11Updated 6 months ago
- Modelling protein conformational landscape with Alphafold☆41Updated this week
- Implementation of Protein Invariant Point Packer (PIPPack)☆32Updated 8 months ago
- A variational autoencoder that directly generates the 3D coordinates of immunoglobulin protein backbones.☆27Updated 2 years ago
- Rosetta FunFolDes – a general framework for the computational design of functional proteins.☆19Updated 5 years ago
- an ultra-fast and accurate program for deterministic protein sidechain packing☆29Updated 2 months ago
- Small_molecule_binder_design_use_pseudocycles☆18Updated 3 months ago
- ☆36Updated last year
- ☆46Updated last week
- A surface-based deep learning approach for the prediction of ligand binding sites on proteins☆39Updated last year
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆20Updated last year
- A bundle of deep-learning packages for biomolecular structure prediction and design contributed to the Rosetta Commons☆34Updated 2 years ago
- Extension of ThermoMPNN for double mutant predictions☆24Updated last month
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Updated last year
- Scripts used for Mulligan et al. (2020): Computationally-designed peptide macrocycle inhibitors of New Delhi metallo-beta-lactamase 1☆16Updated 3 years ago