The official code repository of "OmniESI: A unified framework for enzyme-substrate interaction prediction with progressive conditional deep learning"
☆34Aug 26, 2025Updated last year
Alternatives and similar repositories for OmniESI
Users that are interested in OmniESI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GRACE: Generative Renaissance in Artificial Computational Enzyme Design☆19Jan 8, 2025Updated last year
- ☆36Oct 10, 2025Updated last year
- A generalized enzyme kinetics parameter prediction model.☆98Oct 2, 2025Updated last year
- ☆29Aug 28, 2026Updated last month
- A predictor of enzyme optimal temperature☆18Mar 13, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆37Oct 27, 2025Updated 11 months ago
- ☆86Aug 26, 2025Updated last year
- ☆15Feb 18, 2025Updated last year
- A geometric foundation model for enzyme retrieval with evolutionary insights.☆103Jul 29, 2026Updated 2 months ago
- Machine Learning models for in vitro enzyme kinetic parameter prediction☆98Jun 15, 2026Updated 3 months ago
- a universal molecular interaction modeling platform based on AlphaFold3, supporting structure prediction and analysis for various recepto…☆50Nov 20, 2025Updated 10 months ago
- The gmx_rrcs script is designed to calculate the residues-residues contact scores (rrcs) from a trajectory file generated by GROMACS.☆19Jun 16, 2025Updated last year
- ESMDynamic repo☆37Jun 26, 2026Updated 3 months ago
- Complete saturation mutagenesis of a protein using ESM☆19Feb 20, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Official open-source of CarbonNovo: Joint Design of Protein Structure and Sequence Using a Unified Energy-based Model☆26Nov 18, 2024Updated last year
- PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.☆268Nov 5, 2025Updated 11 months ago
- ☆43Jun 17, 2025Updated last year
- Potts model-based protein sequence design☆117Jul 1, 2026Updated 3 months ago
- ☆118Jan 3, 2026Updated 9 months ago
- Fast and Interpretable Protein Substructure Alignment via Optimal Transport (ICLR 2026)☆27Jun 26, 2026Updated 3 months ago
- Protein solubility prediction tools☆24Dec 13, 2024Updated last year
- Source code of Venus-MAXWELL: Efficient Learning of Protein-Mutation Stability Landscapes using Protein Language Models☆31Updated this week
- ☆20Sep 9, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling☆38Aug 16, 2026Updated last month
- ☆83Sep 12, 2024Updated 2 years ago
- BindCraft modified to make PyRosetta use and installation optional: no license needed☆164Jul 10, 2026Updated 3 months ago
- Machine learning prediction of enzyme optimum pH☆57Apr 29, 2025Updated last year
- Benchmarking scripts for Gaia☆17Apr 10, 2025Updated last year
- ☆17Jun 22, 2025Updated last year
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆96Jul 31, 2026Updated 2 months ago
- ☆73Apr 8, 2025Updated last year
- ☆17Sep 9, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆143Jan 28, 2026Updated 8 months ago
- ☆28Sep 21, 2023Updated 3 years ago
- DynamiSpectra: Decode molecular motion with precision and power☆24Sep 16, 2025Updated last year
- Energy-guided binder design pipeline built on BindCraft☆19Jun 6, 2025Updated last year
- A deep learning framework for deubiquitnase-substrate interaction identification☆13Jul 31, 2025Updated last year
- Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"☆48Aug 5, 2025Updated last year
- ☆27Apr 2, 2024Updated 2 years ago