Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
☆36Aug 23, 2020Updated 6 years ago
Alternatives and similar repositories for bmDCA
Users that are interested in bmDCA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Dec 22, 2017Updated 8 years ago
- Autoregressive networks for protein☆39Feb 27, 2025Updated last year
- Boltzmann machine learning for Potts models of biological data☆13Jul 24, 2024Updated 2 years ago
- Partner specific prediction of protein binding sites☆10Mar 13, 2023Updated 3 years ago
- DeepContact Software☆26Jun 16, 2018Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆18Jul 5, 2019Updated 7 years ago
- Convert PDB residues to their Uniprot equivalents☆17Mar 31, 2020Updated 6 years ago
- Faster, more accurate and entirely open source method for predicting contacts in proteins☆12May 21, 2018Updated 8 years ago
- An evolutionary context-integrated deep learning framework for protein engineering☆72Jun 1, 2022Updated 4 years ago
- Contact map alignment☆44Feb 3, 2021Updated 5 years ago
- CADEE: Computer-Aided Directed Evolution of Enzymes☆17Nov 7, 2023Updated 2 years ago
- A generative latent variable model for biological sequence families.☆258Mar 15, 2022Updated 4 years ago
- Protein common interface databases☆10Apr 13, 2019Updated 7 years ago
- ☆47Sep 16, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fully convolutional neural networks for protein residue-residue contact prediction☆44Mar 25, 2019Updated 7 years ago
- ☆20Jul 16, 2021Updated 5 years ago
- ☆13May 26, 2022Updated 4 years ago
- ☆19Oct 4, 2022Updated 4 years ago
- Universal framework for physically based computational protein design☆36Oct 20, 2026Updated last week
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆18Mar 16, 2025Updated last year
- ☆11Apr 25, 2021Updated 5 years ago
- AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…☆126Updated this week
- This repository contains a set of scripts for performing singular value decomposition on protein multiple sequence alignments, and analyz…☆11Aug 12, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tutorial files☆12Aug 7, 2024Updated 2 years ago
- ☆103Jul 24, 2026Updated 3 months ago
- GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!☆61Oct 17, 2022Updated 4 years ago
- This script can clean up the disordered region in the AlphaFold DB structures to adapt it to the molecular docking, extract the sequence …☆15Apr 20, 2023Updated 3 years ago
- ☆11Mar 28, 2024Updated 2 years ago
- Pseudo Likelihood Maximization for protein in Julia☆52May 15, 2025Updated last year
- This repository contains scripts, data and jupyter notebooks used to produce the evaluation results in the BioPhi 2021 publication☆17Jan 2, 2023Updated 3 years ago
- Direct coupling analysis software for protein and RNA sequences☆61Jul 21, 2025Updated last year
- ☆17Jun 15, 2022Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆28Aug 9, 2023Updated 3 years ago
- Protein hallucination and inpainting with RoseTTAFold☆284Mar 30, 2023Updated 3 years ago
- MaveDB database web application☆13Nov 17, 2023Updated 2 years ago
- reimplementation of mfDCA in python☆12Jul 7, 2019Updated 7 years ago
- ☆137Sep 14, 2022Updated 4 years ago
- UPDATE: All future changes will be pushed to https://github.com/HICAI-ZJU/PromptProtein☆15Apr 23, 2023Updated 3 years ago
- GREMLIN is a method to learn a statistical model of a protein family that captures both conservation and co-evolution patterns in the fam…☆26Jul 3, 2016Updated 10 years ago