Alternatives and similar repositories for HYDRA

Users that are interested in HYDRA are comparing it to the libraries listed below

• Zhang-Runze / PackDock
  PackDock: a Diffusion Based Side Chain Packing Model for Flexible Protein-Ligand Docking
  ☆35Updated 2 months ago
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆35Updated last year
• Hoecker-Lab / pocketoptimizer
  Binding pocket optimization based on force fields and docking scoring functions
  ☆37Updated 8 months ago
• anirudhvenk / antibody-dpo
  ☆25Updated 6 months ago
• tiwarylab / af2rave
  Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2
  ☆59Updated 3 weeks ago
• aqlaboratory / QuickBind
  A Light-Weight And Interpretable Molecular Docking Model
  ☆24Updated last year
• ELELAB / PDBminer
  scripts to find PBD structures for cancer driver proteins
  ☆31Updated last week
• Junjie-Zhu / IDPFold
  Precise Generation of Conformational Ensembles for Intrinsically Disordered Proteins with IDPFold
  ☆25Updated last year
• decodermu / GPD
  Graphormer Based Protein Sequence Design
  ☆25Updated last year
• Zuricho / AlphaFold3_Result_Visualize
  A convinent tool to visualize AlphaFold 3 prediction results with PyMOL and matplotlib
  ☆19Updated last year
• issararab / PEvoLM
  Protein Sequence Evolutionary Information Language Model
  ☆13Updated 2 years ago
• davidekim / parametric_barrels
  Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.
  ☆13Updated last month
• wallnerlab / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆54Updated 3 months ago
• ProteinDesignLab / protpardelle-1c
  Updated Protpardelle models with more robust motif scaffolding and multichain support
  ☆53Updated this week
• iambic-therapeutics / np-bench
  A benchmark for 3D biomolecular structure prediction models
  ☆67Updated 7 months ago
• ohuelab / ColabDesign-cyclic-binder
  ☆37Updated 2 years ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆33Updated 2 years ago
• ProteinDesignLab / protein_shapes
  Metrics to evaluate distributional coverage of generative models of protein structures.
  ☆18Updated 4 months ago
• dgattiwsu / MD_without_molecules
  Molecular dynamics without molecules: searching the conformational space of proteins with generative neural networks
  ☆11Updated 3 years ago
• HannesStark / CodonMPNN
  ☆29Updated last year
• ComputArtCMCG / ProBID-NET
  ☆15Updated 6 months ago
• KhondamirRustamov / FoldCraft
  Fold Conditioned protein design pipeline based on AF2Multimer Hallucination
  ☆44Updated 2 weeks ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆57Updated 6 months ago
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆24Updated last year
• polizzilab / NISE
  Neural Iterative Selection-Expansion using LASErMPNN and Boltz-2x
  ☆29Updated 2 weeks ago
• alepandini / DyNoPy
  DyNoPy
  ☆11Updated last year
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆34Updated last month
• VicFisher / DiffPhore
  Knowledge-Guided Diffusion Model for 3D Ligand-Pharmacophore Mapping
  ☆45Updated 6 months ago
• LongxingCao / pymol_scripts
  bakerlab pymol scripts
  ☆25Updated 5 years ago
• violet-sto / Bridge-IF
  Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"
  ☆18Updated 9 months ago