☆10Apr 1, 2024Updated 2 years ago
Alternatives and similar repositories for HYDRA
Users that are interested in HYDRA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Mar 8, 2024Updated 2 years ago
- ☆15Mar 28, 2025Updated last year
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆13Nov 14, 2025Updated 10 months ago
- protein backbone refinement☆16Sep 12, 2024Updated 2 years ago
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆19Feb 8, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆42Mar 30, 2025Updated last year
- Public version for DistPepFold☆10Jul 17, 2025Updated last year
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆18Mar 16, 2025Updated last year
- Rendering protein mutation movies from predicted 3D structures☆20Dec 7, 2023Updated 2 years ago
- Coarse-grained and Multi-dimensional Data-driven molecular generation (CMD-GEN). This framework bridges three-dimensional ligand-protein …☆18Sep 13, 2025Updated last year
- init project☆15Jul 20, 2025Updated last year
- Official repository for DiffPepBuilder and DiffPepDock tools☆134Oct 24, 2025Updated 10 months ago
- ☆11Sep 24, 2020Updated 6 years ago
- Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"☆48Aug 5, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆121Dec 7, 2022Updated 3 years ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Aug 10, 2023Updated 3 years ago
- ☆21Nov 21, 2025Updated 10 months ago
- A conditionally adapted protein language model for the generation of enzymes☆24Nov 26, 2024Updated last year
- ☆17Feb 20, 2025Updated last year
- Docking Tool Benchmarking Workflow☆25Jul 17, 2024Updated 2 years ago
- ☆11May 22, 2024Updated 2 years ago
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated last year
- ☆13Mar 28, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Collection of useful bioinformatic functions and tools for various computational biology pipelines☆54Updated this week
- This repository is the official code source of PPFlow: Target-Aware Peptide Design with Torsional Flow Matching (ICML2024)☆95May 17, 2025Updated last year
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆100Jun 11, 2025Updated last year
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆30Dec 21, 2023Updated 2 years ago
- Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)☆134Apr 16, 2025Updated last year
- ☆24Sep 5, 2025Updated last year
- ☆34Feb 5, 2025Updated last year
- Tree-Invent: A novel molecular generative model constrained with topological tree☆14Jul 26, 2023Updated 3 years ago
- Implementation of the Paper "Physics Informed Diffusion Model for Protein Pocket Specific 3D Molecular Generation" published in Computers…☆16Mar 14, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆14Jul 9, 2025Updated last year
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆38Nov 7, 2024Updated last year
- Inpainting protein sequence and structure☆13Nov 10, 2023Updated 2 years ago
- ☆36Nov 22, 2023Updated 2 years ago
- Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.☆29Mar 8, 2025Updated last year
- Toolkit for structure-based deep learning on RNA.☆46Sep 4, 2026Updated 2 weeks ago
- Code for peptide ligand design with machine learning models.☆35Dec 8, 2024Updated last year