Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)
☆72Jul 19, 2024Updated last year
Alternatives and similar repositories for GraDe_IF
Users that are interested in GraDe_IF are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Protein representation and design under a single training scheme☆24Mar 3, 2026Updated 3 weeks ago
- Adapting protein language models for structure-conditioned design☆40Aug 5, 2024Updated last year
- ☆214Sep 24, 2024Updated last year
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆18Feb 8, 2024Updated 2 years ago
- A conditionally adapted protein language model for the generation of enzymes☆23Nov 26, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Implementation of Protein Invariant Point Packer (PIPPack)☆35May 28, 2024Updated last year
- The official implementation of the ICLR'23 paper PiFold: Toward effective and efficient protein inverse folding.☆183Jun 17, 2023Updated 2 years ago
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆18Mar 16, 2025Updated last year
- The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics☆201Sep 18, 2024Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆72Jan 31, 2024Updated 2 years ago
- Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures☆49Jan 24, 2022Updated 4 years ago
- ☆23Nov 6, 2024Updated last year
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆330Oct 28, 2024Updated last year
- Implementation for SE(3) diffusion model with application to protein backbone generation☆415Jul 3, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆31Dec 12, 2024Updated last year
- Generative Models for Graph-Based Protein Design☆286Dec 24, 2020Updated 5 years ago
- Fast protein backbone generation with SE(3) flow matching.☆319Jul 19, 2024Updated last year
- Aligning protein generative models with experimental fitness☆120Mar 12, 2026Updated 2 weeks ago
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Sep 18, 2023Updated 2 years ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆186Apr 21, 2024Updated last year
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆102Jan 11, 2025Updated last year
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆82Aug 11, 2024Updated last year
- ☆19Nov 21, 2025Updated 4 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023…☆22Aug 8, 2024Updated last year
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- ☆18Feb 25, 2026Updated last month
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆278Dec 10, 2024Updated last year
- ☆31Nov 23, 2025Updated 4 months ago
- Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"☆24Sep 18, 2025Updated 6 months ago
- All-atom inverse protein folding through discrete flow matching (ICML2025)☆24Mar 22, 2026Updated last week
- ☆118Dec 7, 2022Updated 3 years ago
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆86May 16, 2025Updated 10 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆319Nov 15, 2025Updated 4 months ago
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆664Jan 15, 2026Updated 2 months ago
- ☆36Jun 17, 2025Updated 9 months ago
- Source code of PETA: Evaluating the Impact of Protein Transfer Learning with Sub-word Tokenization on Downstream Applications.☆33May 16, 2025Updated 10 months ago
- Code for RL-DIF☆16Jun 24, 2025Updated 9 months ago
- ☆36Mar 19, 2025Updated last year
- CLEAN: a contrastive learning model for high-quality functional prediction of proteins☆306Apr 6, 2025Updated 11 months ago