CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes
☆44Jun 17, 2025Updated 10 months ago
Alternatives and similar repositories for CARE
Users that are interested in CARE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reaction-Conditioned Virtual Screening of Enzymes☆42Jun 11, 2025Updated 10 months ago
- Official repository of ReactZyme☆41Oct 12, 2024Updated last year
- ☆16Mar 28, 2025Updated last year
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆48Nov 4, 2025Updated 6 months ago
- Python package to atom map, correct and suggest enzymatic reactions☆45Apr 11, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code for the paper "Learning to engineer protein flexibility".☆23Mar 24, 2026Updated last month
- RXN for biochemical reactions☆76Oct 18, 2022Updated 3 years ago
- A conditionally adapted protein language model for the generation of enzymes☆23Nov 26, 2024Updated last year
- A geometric foundation model for enzyme retrieval with evolutionary insights.☆88Apr 21, 2026Updated 2 weeks ago
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆22Jun 26, 2023Updated 2 years ago
- A toolkit for enzyme discovery☆26Mar 3, 2026Updated 2 months ago
- ☆40Sep 17, 2024Updated last year
- ☆23Nov 6, 2024Updated last year
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆71Feb 21, 2026Updated 2 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆247Mar 26, 2026Updated last month
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆39Jul 25, 2024Updated last year
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆123May 27, 2025Updated 11 months ago
- ☆39Mar 30, 2025Updated last year
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆18Mar 16, 2025Updated last year
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆44Jun 28, 2021Updated 4 years ago
- Fast protein domain structure embedding+search tool☆29Sep 21, 2025Updated 7 months ago
- Official repository of GENzyme☆63Nov 29, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆151Apr 16, 2025Updated last year
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆51Dec 3, 2024Updated last year
- ☆33Feb 5, 2025Updated last year
- Official repository of EnzymeFlow☆101Dec 7, 2024Updated last year
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆186Apr 21, 2024Updated 2 years ago
- scripts to find PBD structures for cancer driver proteins☆31Feb 27, 2026Updated 2 months ago
- Comprehensive Benchmark for Protein-Peptide Complex Structure Prediction with AlphaFold3☆20Sep 4, 2025Updated 8 months ago
- Adapting protein language models for structure-conditioned design☆42Aug 5, 2024Updated last year
- B-cell Hybrid Immune Variant Engine☆12Apr 7, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Efficient manipulation of protein structures in Python☆67Sep 27, 2025Updated 7 months ago
- Terminal viewer for pdb files☆22Jan 5, 2026Updated 4 months ago
- [NeurIPS 2024] "NovoBench: Benchmarking Deep Learning-based \emph{De Novo} Sequencing Methods in Proteomics"☆13Nov 23, 2024Updated last year
- ☆97Oct 14, 2025Updated 6 months ago
- Code for the paper "NovoMolGen: Rethinking Molecular Language Model Pretraining"☆26Jan 18, 2026Updated 3 months ago
- A command-line interface and Python library for generating AlphaFold3 input files.☆39Jan 2, 2026Updated 4 months ago
- EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling☆35Updated this week