jsunn-y / CARE
CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes
☆34Updated 3 months ago
Alternatives and similar repositories for CARE:
Users that are interested in CARE are comparing it to the libraries listed below
- ☆34Updated 7 months ago
- Structure-Informed Protein Language Model☆32Updated last year
- Python package to atom map, correct and suggest enzymatic reactions☆38Updated last year
- ☆16Updated 6 months ago
- Efficient implementatin of ESM family.☆55Updated 3 months ago
- Official repository of ReactZyme☆30Updated 6 months ago
- Machine learning prediction of enzyme optimum pH☆33Updated last week
- ☆66Updated last month
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆12Updated last month
- A benchmark for comprehensive evaluation on protein structure tokenization methods☆14Updated last week
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆27Updated 8 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆34Updated last month
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆58Updated last year
- This repository implements Gibbs sampling with Graph-based Smoothing☆38Updated 11 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆39Updated 5 months ago
- ☆17Updated 2 years ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆50Updated 5 months ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆32Updated 9 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆35Updated 3 weeks ago
- ☆20Updated 11 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆46Updated 4 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆36Updated this week
- An antibody-specific language model focusing on NGL prediction☆27Updated 8 months ago
- ☆27Updated 4 months ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆55Updated 2 weeks ago
- ☆76Updated last month
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Updated last year
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆32Updated 5 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆57Updated last year
- Reaction-Conditioned Virtual Screening of Enzymes☆34Updated 3 weeks ago