CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes
☆43Jun 17, 2025Updated 9 months ago
Alternatives and similar repositories for CARE
Users that are interested in CARE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reaction-Conditioned Virtual Screening of Enzymes☆42Jun 11, 2025Updated 9 months ago
- Official repository of ReactZyme☆40Oct 12, 2024Updated last year
- ☆15Mar 28, 2025Updated 11 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆48Nov 4, 2025Updated 4 months ago
- Python package to atom map, correct and suggest enzymatic reactions☆43Apr 11, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Code for the paper "Learning to engineer protein flexibility".☆22Jan 21, 2026Updated 2 months ago
- RXN for biochemical reactions☆74Oct 18, 2022Updated 3 years ago
- A conditionally adapted protein language model for the generation of enzymes☆23Nov 26, 2024Updated last year
- A geometric foundation model for enzyme retrieval with evolutionary insights.☆79Updated this week
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆22Jun 26, 2023Updated 2 years ago
- A toolkit for enzyme discovery☆22Mar 3, 2026Updated 3 weeks ago
- ☆40Sep 17, 2024Updated last year
- ☆23Nov 6, 2024Updated last year
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆232Aug 7, 2025Updated 7 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 4 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated last month
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆39Jul 25, 2024Updated last year
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆121May 27, 2025Updated 9 months ago
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆40Jun 28, 2021Updated 4 years ago
- Fast protein domain structure embedding+search tool☆27Sep 21, 2025Updated 6 months ago
- ☆37Mar 30, 2025Updated 11 months ago
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆18Mar 16, 2025Updated last year
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆47Dec 3, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Official repository of GENzyme☆63Nov 29, 2024Updated last year
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆150Apr 16, 2025Updated 11 months ago
- ☆32Feb 5, 2025Updated last year
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆186Apr 21, 2024Updated last year
- Official repository of EnzymeFlow☆100Dec 7, 2024Updated last year
- scripts to find PBD structures for cancer driver proteins☆31Feb 27, 2026Updated 3 weeks ago
- Comprehensive Benchmark for Protein-Peptide Complex Structure Prediction with AlphaFold3☆19Sep 4, 2025Updated 6 months ago
- B-cell Hybrid Immune Variant Engine☆11Aug 18, 2025Updated 7 months ago
- Efficient manipulation of protein structures in Python☆65Sep 27, 2025Updated 5 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Terminal viewer for pdb files☆21Jan 5, 2026Updated 2 months ago
- [NeurIPS 2024] "NovoBench: Benchmarking Deep Learning-based \emph{De Novo} Sequencing Methods in Proteomics"☆12Nov 23, 2024Updated last year
- ☆96Oct 14, 2025Updated 5 months ago
- EnzyHTP is a python library that automates the complete life-cycle of enzyme modeling☆32Mar 10, 2026Updated 2 weeks ago
- Code for the paper "NovoMolGen: Rethinking Molecular Language Model Pretraining"☆24Jan 18, 2026Updated 2 months ago
- A command-line interface and Python library for generating AlphaFold3 input files.☆38Jan 2, 2026Updated 2 months ago
- bakerlab pymol scripts☆26Feb 6, 2020Updated 6 years ago