jsunn-y / CARELinks
CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes
☆39Updated 6 months ago
Alternatives and similar repositories for CARE
Users that are interested in CARE are comparing it to the libraries listed below
Sorting:
- Python package to atom map, correct and suggest enzymatic reactions☆41Updated last year
- ☆39Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆70Updated last year
- Official repository of ReactZyme☆37Updated last year
- ☆32Updated 4 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆40Updated 4 years ago
- Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”☆45Updated 2 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆59Updated 2 months ago
- Official repository of EnzymeFlow☆97Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- ☆32Updated last year
- ☆72Updated 9 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆46Updated 2 months ago
- Predicts the solubility and usability for purification of proteins expressed in E. coli using protein language models☆42Updated last year
- ☆27Updated 9 months ago
- ☆41Updated 4 months ago
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆35Updated last month
- ☆76Updated last year
- Efficient implementatin of ESM family.☆78Updated 4 months ago
- Aligning protein generative models with experimental fitness☆115Updated 2 months ago
- Code for humanization of antibody and nanobody☆68Updated 4 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Updated last month
- [NeurIPS 2024] MSA generative pretraining for advancing protein structure prediction☆34Updated 9 months ago
- Structure-Informed Protein Language Model☆36Updated last year
- Active Learning-Assisted Directed Evolution for Protein Engineering☆76Updated 2 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆41Updated 9 months ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆44Updated 7 months ago
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆56Updated last year
- ☆30Updated 2 months ago