Alternatives and similar repositories for genomewarp

Users that are interested in genomewarp are comparing it to the libraries listed below

• ncbi / ncbi-vdb
  ncbi-vdb
  ☆92Updated this week
• dnanexus-rnd / GLnexus
  Scalable gVCF merging and joint variant calling for population sequencing projects
  ☆174Updated last year
• ncbi / ngs
  NGS Language Bindings
  ☆120Updated 2 years ago
• tfwillems / HipSTR
  Genotype and phase short tandem repeats using Illumina whole-genome sequencing data
  ☆100Updated 2 years ago
• ncbi / ngs-tools
  ☆107Updated last month
• bioinform / varsim
  VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications
  ☆90Updated last year
• lh3 / fermikit
  De novo assembly based variant calling pipeline for Illumina short reads
  ☆110Updated 5 years ago
• broadinstitute / long-read-pipelines
  Long read production pipelines
  ☆151Updated this week
• DecodeGenetics / graphtyper
  Population-scale genotyping using pangenome graphs
  ☆195Updated last year
• Illumina / PlatinumGenomes
  The Platinum Genomes Truthset
  ☆89Updated 8 years ago
• yjx1217 / simuG
  simuG: a general-purpose genome simulator
  ☆97Updated 6 months ago
• Griffan / VerifyBamID
  VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
  ☆99Updated last year
• CCDG / Pipeline-Standardization
  ☆82Updated 7 years ago
• andyrimmer / Platypus
  Platypus Variant Caller
  ☆108Updated last year
• genome-in-a-bottle / giab_latest_release
  This repository contains information about latest release from Genome in a Bottle project
  ☆75Updated 6 years ago
• iqbal-lab-org / gramtools
  Genome inference from a population reference graph
  ☆96Updated 9 months ago
• mcveanlab / mccortex
  De novo genome assembly and multisample variant calling
  ☆112Updated 6 years ago
• broadinstitute / cromshell
  CLI for interacting with Cromwell servers
  ☆55Updated last year
• Illumina / akt
  Ancestry and Kinship Tools
  ☆70Updated 3 years ago
• mozack / abra
  Assembly Based ReAligner
  ☆74Updated 7 years ago
• bcgsc / arcs
  🌈Scaffold genome sequence assemblies using linked or long read sequencing data
  ☆94Updated last year
• ekg / fastahack
  utilities for indexing and sequence extraction from FASTA files
  ☆59Updated 4 years ago
• human-pangenomics / HG002_Data_Freeze_v1.0
  Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)
  ☆80Updated 3 years ago
• lh3 / bgt
  Flexible genotype query among 30,000+ samples whole-genome
  ☆94Updated 6 years ago
• genome-in-a-bottle / giab_tools_methods
  This repository contains a list of tools or methods that have been used in GIAB analysis
  ☆29Updated 6 years ago
• lh3 / CHM-eval
  ☆55Updated 5 years ago
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆81Updated last year
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆109Updated last month
• 0xTCG / aldy
  Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
  ☆67Updated this week
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆84Updated this week