verilylifesciences / genomewarp
GenomeWarp translates genetic variants from one genome assembly version to another.
☆97Updated last year
Related projects ⓘ
Alternatives and complementary repositories for genomewarp
- De novo genome assembly and multisample variant calling☆113Updated 5 years ago
- Population-scale genotyping using pangenome graphs☆170Updated 8 months ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆97Updated last year
- ☆81Updated 5 years ago
- NGS Language Bindings☆117Updated 11 months ago
- ☆103Updated 3 months ago
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆92Updated 2 weeks ago
- conda recipes for genomic data☆85Updated 3 years ago
- ☆35Updated last year
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆94Updated 6 months ago
- De novo assembly based variant calling pipeline for Illumina short reads☆107Updated 3 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆201Updated 10 months ago
- A Strategy for Building and Using a Human Reference Pangenome☆70Updated 4 years ago
- Tools for processing and analyzing structural variants.☆150Updated 2 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆78Updated this week
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆74Updated 4 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 2 years ago
- Tools for the analysis of structural variation in genomes☆77Updated 7 months ago
- utilities for indexing and sequence extraction from FASTA files☆59Updated 3 years ago
- Genome inference from a population reference graph☆93Updated 2 years ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆93Updated last month
- A tool to genotype CYP2D6 with WGS data☆49Updated last year
- GA4GH Variation Representation Python Implementation☆51Updated this week
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆69Updated 4 years ago
- simuG: a general-purpose genome simulator☆87Updated 3 months ago
- Browser for ExAC consortium data☆106Updated 2 years ago
- Jasmine: SV Merging Across Samples☆181Updated 2 years ago
- ncbi-vdb☆89Updated this week
- ☆61Updated 8 years ago