quinlan-lab / hts-pythonLinks
pythonic wrapper for htslib
☆24Updated 8 years ago
Alternatives and similar repositories for hts-python
Users that are interested in hts-python are comparing it to the libraries listed below
Sorting:
- sort genomic data☆36Updated 2 months ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated last year
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆30Updated 7 years ago
- Python bindings to minimap2☆16Updated 8 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- Detection of structural variants in cancer mate-pair and paired-end data☆13Updated 6 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 months ago
- Immuological gene typing and annotation for genome assembly☆38Updated 9 months ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated 2 months ago
- Hidden Markov Model based Copy number caller☆20Updated last month
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 4 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- 🍶 Genome assembly with short sequence reads☆25Updated last year
- Split a BAM file by haplotype support☆16Updated 8 years ago
- ☆16Updated 11 months ago
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Updated 2 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year