Alternatives and similar repositories for jigv:

Users that are interested in jigv are comparing it to the libraries listed below

• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆137Updated 8 months ago
• parklab / bamsnap
  ☆118Updated 2 months ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆111Updated last month
• brentp / duphold
  don't get DUP'ed or DEL'ed by your putative SVs.
  ☆103Updated 4 years ago
• tobiasrausch / alfred
  BAM Statistics, Feature Counting and Annotation
  ☆146Updated 3 months ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆112Updated 4 months ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆113Updated last week
• geocarvalho / sv-cnv-studies
  Relevant papers for CNV and SV approaches
  ☆94Updated 2 months ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆195Updated last month
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆100Updated last week
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆96Updated last year
• compbiocore / VariantVisualization.jl
  Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:
  ☆85Updated last year
• secastel / phaser
  phasing and Allele Specific Expression from RNA-seq
  ☆111Updated 6 months ago
• dnanexus-archive / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆101Updated 4 years ago
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆91Updated 4 years ago
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆92Updated 10 months ago
• ryanlayer / stix
  Structural Variant Index
  ☆71Updated last month
• mozack / abra2
  ABRA2
  ☆92Updated 2 years ago
• CSB5 / lofreq
  LoFreq Star: Sensitive variant calling from sequencing data
  ☆102Updated 2 years ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆118Updated 5 months ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆65Updated 3 months ago
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆132Updated last week
• KCCG / ClinSV
  Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data
  ☆67Updated 4 months ago
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆84Updated 6 years ago
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆132Updated 3 months ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆57Updated this week
• rrwick / Deepbinner
  a signal-level demultiplexer for Oxford Nanopore reads
  ☆123Updated 4 years ago
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆94Updated last month
• svviz / svviz
  Read visualizer for structural variants
  ☆81Updated 6 years ago