Alternatives and similar repositories for bamsnap:

Users that are interested in bamsnap are comparing it to the libraries listed below

• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆96Updated last year
• tobiasrausch / alfred
  BAM Statistics, Feature Counting and Annotation
  ☆146Updated 3 months ago
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆88Updated 2 years ago
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆137Updated 8 months ago
• brentp / jigv
  igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"
  ☆126Updated last year
• PacificBiosciences / pb-assembly
  PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
  ☆115Updated 4 years ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆65Updated 3 months ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆111Updated last month
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆132Updated 3 months ago
• rrwick / Deepbinner
  a signal-level demultiplexer for Oxford Nanopore reads
  ☆123Updated 4 years ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆91Updated 4 years ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆113Updated last week
• tderrien / FEELnc
  FEELnc : FlExible Extraction of LncRNA
  ☆84Updated 4 months ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆112Updated 4 months ago
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆113Updated last week
• brentp / duphold
  don't get DUP'ed or DEL'ed by your putative SVs.
  ☆103Updated 4 years ago
• parklab / xTea
  Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
  ☆103Updated last week
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆104Updated 7 months ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆121Updated this week
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆88Updated 2 months ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆118Updated 5 months ago
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆104Updated 7 months ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆195Updated last month
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆136Updated 2 weeks ago
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 3 years ago
• dnanexus-archive / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆101Updated 4 years ago
• epi2me-labs / wf-basecalling
  ☆36Updated last month
• CSB5 / lofreq
  LoFreq Star: Sensitive variant calling from sequencing data
  ☆102Updated 2 years ago
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆96Updated 10 months ago