parklab / bamsnapLinks
☆122Updated 6 months ago
Alternatives and similar repositories for bamsnap
Users that are interested in bamsnap are comparing it to the libraries listed below
Sorting:
- BAM Statistics, Feature Counting and Annotation☆151Updated last week
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Tools for plotting methylation data in various ways☆169Updated 2 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Updated 5 months ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆118Updated 6 months ago
- Match up paired end fastq files quickly and efficiently.☆153Updated last year
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 5 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆110Updated 3 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆121Updated 3 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆161Updated 11 months ago
- An efficient FASTQ manipulation suite☆138Updated 6 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆115Updated 4 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 8 months ago
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆114Updated this week
- VCF-kit: Assorted utilities for the variant call format☆132Updated 6 months ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆145Updated 9 years ago
- NEAT read simulation tools☆101Updated 3 years ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆117Updated 5 years ago
- Research release basecalling models and configurations☆117Updated 8 months ago
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- accurate LiftOver tool for new genome assemblies☆147Updated last year
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆112Updated 7 months ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆109Updated 2 months ago
- SV caller for nanopore data☆92Updated 5 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Dfam Transposable Element Tools Docker container.☆101Updated last month
- Python programs for processing GFF3 files☆102Updated last month