parklab / bamsnap

Related projects ⓘ

Alternatives and complementary repositories for bamsnap

• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆88Updated 2 years ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆96Updated last year
• tobiasrausch / alfred
  BAM Statistics, Feature Counting and Annotation
  ☆145Updated 3 weeks ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆108Updated 2 months ago
• parklab / xTea
  Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
  ☆102Updated 4 months ago
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆137Updated 5 months ago
• PacificBiosciences / pb-assembly
  PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
  ☆113Updated 4 years ago
• rrwick / Deepbinner
  a signal-level demultiplexer for Oxford Nanopore reads
  ☆124Updated 3 years ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• brentp / duphold
  don't get DUP'ed or DEL'ed by your putative SVs.
  ☆101Updated 3 years ago
• 10XGenomics / supernova
  10x Genomics Linked-Read Diploid De Novo Assembler
  ☆64Updated 5 years ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆65Updated 3 weeks ago
• epi2me-labs / wf-human-variation
  ☆105Updated this week
• biocorecrg / master_of_pores
  Nextflow pipeline for analysis of direct RNA Nanopore reads
  ☆93Updated last month
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆128Updated last year
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆130Updated 3 weeks ago
• secastel / phaser
  phasing and Allele Specific Expression from RNA-seq
  ☆111Updated 4 months ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆111Updated 3 months ago
• brentp / jigv
  igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"
  ☆122Updated last year
• epi2me-labs / wf-basecalling
  ☆34Updated last week
• SorenKarst / longread_umi
  ☆76Updated 4 years ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆93Updated 10 months ago
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆84Updated 6 years ago
• geocarvalho / sv-cnv-studies
  Relevant papers for CNV and SV approaches
  ☆94Updated 2 weeks ago
• Kingsford-Group / scallop
  Scallop is a reference-based transcriptome assembler for RNA-seq
  ☆89Updated 3 years ago
• gencorefacility / variant-calling-pipeline-gatk4
  Variant Calling Pipeline Using GATK4 and Nextflow
  ☆53Updated last year
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆181Updated 2 years ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆103Updated 5 months ago
• fbreitwieser / bamcov
  Quickly calculate and visualize sequence coverage in alignment files
  ☆99Updated 5 years ago