bioinformed / vgraphLinks
vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph representation of genomic variants in to precisely compare complex variants that are refractory to comparison by conventional comparison methods.
☆43Updated 3 years ago
Alternatives and similar repositories for vgraph
Users that are interested in vgraph are comparing it to the libraries listed below
Sorting:
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆51Updated 7 months ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 7 months ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- ☆37Updated 4 years ago
- RUFUS k-mer based genomic variant detection☆54Updated 6 months ago
- a string to graph aligner☆41Updated 9 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆95Updated 5 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- sort genomic data☆35Updated 5 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- ☆29Updated 4 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- Variant caller GUI + genetic disease analysis☆22Updated 5 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year