lh3 / CHM-evalLinks
☆54Updated 5 years ago
Alternatives and similar repositories for CHM-eval
Users that are interested in CHM-eval are comparing it to the libraries listed below
Sorting:
- Filtering and profiling of next-generational sequencing data using region-specific rules☆78Updated last year
- Read visualizer for structural variants☆84Updated 6 years ago
- Data and information about the Polaris study☆53Updated 5 years ago
- Thousand Variant Callers Project Repository☆74Updated 5 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 2 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- Structural Variant Index☆75Updated 7 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆102Updated 4 years ago
- Concordance and contamination estimator for tumor–normal pairs☆60Updated 9 months ago
- BigWig and BAM utilities☆97Updated last year
- Assembly Based ReAligner☆74Updated 7 years ago
- A read extraction and realignment tool for next generation sequencing data☆101Updated 2 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Updated 6 years ago
- High-performance error correction for Illumina resequencing data☆72Updated 9 years ago
- ☆78Updated 11 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- ☆39Updated last year
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆33Updated last week
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆72Updated 11 months ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆71Updated last month
- Flexible genotype query among 30,000+ samples whole-genome☆95Updated 5 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆71Updated 7 years ago
- ☆43Updated 10 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- GEM-Mapper v3☆58Updated 4 months ago
- An awk-like VCF parser☆56Updated last year
- ☆46Updated 5 years ago